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Mutant Information

Variant Information

Single base substitutions: 24

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8048825	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g14370
SBS	Chr1	19481601	G-A	HOMO	INTRON
SBS	Chr2	9440332	C-T	HOMO	INTERGENIC
SBS	Chr2	11344000	C-T	HET	INTRON
SBS	Chr3	6265758	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g11950
SBS	Chr3	6265759	C-A	HET	SYNONYMOUS_CODING
SBS	Chr4	7744056	G-T	HOMO	INTERGENIC
SBS	Chr4	34218823	T-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g57520
SBS	Chr6	1991806	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g04580
SBS	Chr6	3641401	A-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g07550
SBS	Chr6	10210867	G-T	HET	INTRON
SBS	Chr6	11046324	C-T	HET	INTERGENIC
SBS	Chr6	24799829	G-A	HOMO	INTERGENIC
SBS	Chr7	9777599	G-A	HET	SYNONYMOUS_CODING
SBS	Chr7	11929506	A-C	HOMO	INTERGENIC
SBS	Chr8	2831598	C-T	HET	INTERGENIC
SBS	Chr8	10362898	A-T	HOMO	INTRON
SBS	Chr9	4273250	G-A	HOMO	INTERGENIC
SBS	Chr9	17808091	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g29340
SBS	Chr11	4355424	G-A	HET	INTERGENIC
SBS	Chr11	13619693	G-A	HET	INTERGENIC
SBS	Chr11	15623751	A-G	HET	INTERGENIC
SBS	Chr12	13294443	C-G	HET	INTERGENIC
SBS	Chr12	14605634	A-T	HET	INTERGENIC

Deletions: 32

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	459446	459447	1
Deletion	Chr12	890568	890569	1
Deletion	Chr6	4417735	4417811	76
Deletion	Chr12	5281773	5281874	101
Deletion	Chr5	5957946	5957948	2
Deletion	Chr3	6689338	6689339	1	LOC_Os03g12600
Deletion	Chr6	7626925	7626926	1
Deletion	Chr8	8231649	8231650	1
Deletion	Chr6	9135032	9135037	5
Deletion	Chr8	9162053	9162066	13
Deletion	Chr5	10481074	10481075	1
Deletion	Chr7	11447635	11447636	1
Deletion	Chr12	14545812	14545813	1
Deletion	Chr1	14574548	14574550	2	LOC_Os01g25710
Deletion	Chr9	14745045	14745051	6
Deletion	Chr1	15269542	15269543	1
Deletion	Chr6	15431939	15432403	464
Deletion	Chr3	15690866	15690963	97
Deletion	Chr9	16778813	16778814	1
Deletion	Chr1	19667001	19795000	128000	18
Deletion	Chr1	19798001	19875000	77000	16
Deletion	Chr9	20171638	20171670	32
Deletion	Chr11	23352994	23352995	1
Deletion	Chr6	23369879	23369882	3
Deletion	Chr7	23537470	23537477	7
Deletion	Chr12	24603999	24604000	1
Deletion	Chr1	24733731	24733732	1
Deletion	Chr6	25689829	25689830	1
Deletion	Chr6	27802088	27802092	4	LOC_Os06g45920
Deletion	Chr4	29314001	29352000	38000	7
Deletion	Chr6	30470016	30470017	1
Deletion	Chr1	43091614	43091620	6

Insertions: 21

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr2	23398527	23398532	6
Insertion	Chr4	17475555	17475558	4
Insertion	Chr8	15897923	15897923	1
Insertion	Chr10	12672781	12672782	2	LOC_Os10g24660
Insertion	Chr12	27134439	27134445	7
Insertion	Chr2	9831493	9831493	1
Insertion	Chr3	3029054	3029055	2
Insertion	Chr3	19640311	19640311	1
Insertion	Chr4	15144491	15144491	1
Insertion	Chr4	15160849	15160852	4
Insertion	Chr5	13840627	13840628	2
Insertion	Chr5	29942088	29942088	1
Insertion	Chr7	19678469	19678469	1	LOC_Os07g32910
Insertion	Chr9	12572567	12572567	1
Insertion	Chr10	3218861	3218862	2
Insertion	Chr10	7186923	7186944	22
Insertion	Chr10	12723232	12723232	1
Insertion	Chr10	14002198	14002198	1
Insertion	Chr10	21086097	21086097	1
Insertion	Chr12	3893391	3893391	1
Insertion	Chr12	9920540	9920540	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	2656548	2661808
Inversion	Chr3	2656590	2661839

No Translocation

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