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| Mutant Information |
|---|
| Mutant Name | FN4427-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4427-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 3
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr11 | 13599152 | T-A | HET | SYNONYMOUS_CODING | |
| SBS | Chr6 | 11230487 | G-C | HET | INTRON | |
| SBS | Chr8 | 13846779 | G-A | HET | INTERGENIC |
Deletions: 34
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr6 | 56169 | 56523 | 354 | |
| Deletion | Chr6 | 468583 | 468584 | 1 | |
| Deletion | Chr7 | 1413023 | 1413024 | 1 | |
| Deletion | Chr3 | 3968230 | 3968233 | 3 | |
| Deletion | Chr9 | 4855075 | 4855076 | 1 | |
| Deletion | Chr5 | 5875865 | 5875866 | 1 | |
| Deletion | Chr10 | 7152674 | 7152675 | 1 | |
| Deletion | Chr9 | 8328294 | 8328295 | 1 | |
| Deletion | Chr1 | 8338422 | 8338428 | 6 | |
| Deletion | Chr11 | 9104310 | 9104311 | 1 | |
| Deletion | Chr12 | 9191931 | 9191932 | 1 | |
| Deletion | Chr1 | 11566778 | 11566819 | 41 | LOC_Os01g20760 |
| Deletion | Chr11 | 12082150 | 12082182 | 32 | |
| Deletion | Chr11 | 12109733 | 12109734 | 1 | |
| Deletion | Chr11 | 12533012 | 12533013 | 1 | |
| Deletion | Chr4 | 12552839 | 12552840 | 1 | |
| Deletion | Chr3 | 13106943 | 13107034 | 91 | |
| Deletion | Chr2 | 13636193 | 13636235 | 42 | |
| Deletion | Chr5 | 14435675 | 14435676 | 1 | |
| Deletion | Chr8 | 16576616 | 16576617 | 1 | |
| Deletion | Chr2 | 16714784 | 16714785 | 1 | LOC_Os02g28260 |
| Deletion | Chr3 | 17761966 | 17761969 | 3 | LOC_Os03g31190 |
| Deletion | Chr12 | 18810624 | 18810625 | 1 | |
| Deletion | Chr8 | 21147069 | 21147072 | 3 | |
| Deletion | Chr7 | 22566267 | 22566268 | 1 | |
| Deletion | Chr10 | 22589639 | 22589643 | 4 | |
| Deletion | Chr2 | 23498809 | 23498810 | 1 | |
| Deletion | Chr8 | 23526593 | 23526594 | 1 | |
| Deletion | Chr2 | 24758848 | 24758864 | 16 | |
| Deletion | Chr11 | 24785924 | 24785926 | 2 | |
| Deletion | Chr5 | 25081001 | 25094000 | 13000 | |
| Deletion | Chr2 | 25724224 | 25724244 | 20 | LOC_Os02g42780 |
| Deletion | Chr11 | 26634518 | 26634603 | 85 | |
| Deletion | Chr4 | 27594280 | 27594281 | 1 |
Insertions: 38
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 11104506 | 11104510 | 5 | |
| Insertion | Chr1 | 12784947 | 12784947 | 1 | |
| Insertion | Chr1 | 31933798 | 31933798 | 1 | |
| Insertion | Chr10 | 11333836 | 11333836 | 1 | |
| Insertion | Chr10 | 12262911 | 12262912 | 2 | |
| Insertion | Chr10 | 19242690 | 19242690 | 1 | |
| Insertion | Chr10 | 5134468 | 5134468 | 1 | |
| Insertion | Chr10 | 5780123 | 5780123 | 1 | |
| Insertion | Chr10 | 8752996 | 8752996 | 1 | |
| Insertion | Chr11 | 13608666 | 13608666 | 1 | |
| Insertion | Chr11 | 16230678 | 16230678 | 1 | |
| Insertion | Chr11 | 20988560 | 20988560 | 1 | |
| Insertion | Chr12 | 17028104 | 17028104 | 1 | |
| Insertion | Chr12 | 17433694 | 17433694 | 1 | |
| Insertion | Chr12 | 22589467 | 22589467 | 1 | |
| Insertion | Chr2 | 25467784 | 25467784 | 1 | |
| Insertion | Chr2 | 35351440 | 35351440 | 1 | |
| Insertion | Chr3 | 29687024 | 29687024 | 1 | |
| Insertion | Chr4 | 12265757 | 12265757 | 1 | |
| Insertion | Chr4 | 15237418 | 15237418 | 1 | |
| Insertion | Chr4 | 31598752 | 31598753 | 2 | |
| Insertion | Chr4 | 31827411 | 31827418 | 8 | |
| Insertion | Chr4 | 6469678 | 6469679 | 2 | |
| Insertion | Chr5 | 11674789 | 11674789 | 1 | |
| Insertion | Chr5 | 21261776 | 21261776 | 1 | |
| Insertion | Chr6 | 11110065 | 11110065 | 1 | |
| Insertion | Chr6 | 21920856 | 21920857 | 2 | |
| Insertion | Chr6 | 23090979 | 23090979 | 1 | LOC_Os06g38920 |
| Insertion | Chr6 | 29511572 | 29511572 | 1 | |
| Insertion | Chr6 | 423098 | 423098 | 1 | |
| Insertion | Chr6 | 6961857 | 6961857 | 1 | |
| Insertion | Chr7 | 14415095 | 14415095 | 1 | |
| Insertion | Chr7 | 18905735 | 18905735 | 1 | |
| Insertion | Chr7 | 20941584 | 20941584 | 1 | |
| Insertion | Chr7 | 26204859 | 26204859 | 1 | |
| Insertion | Chr7 | 27221149 | 27221149 | 1 | |
| Insertion | Chr9 | 13474506 | 13474506 | 1 | |
| Insertion | Chr9 | 7562765 | 7562765 | 1 |
Inversions: 5
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr5 | 10089067 | 10224627 | |
| Inversion | Chr1 | 24321814 | 24322046 | |
| Inversion | Chr1 | 25007827 | 25007933 | |
| Inversion | Chr4 | 28429004 | 28429170 | LOC_Os04g47870 |
| Inversion | Chr1 | 35386915 | 35387041 | LOC_Os01g61120 |
Translocations: 3
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr12 | 7774875 | Chr3 | 4160553 | |
| Translocation | Chr7 | 10040008 | Chr4 | 6187118 | |
| Translocation | Chr8 | 27365054 | Chr4 | 18426305 |