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Mutant Information

Variant Information

Single base substitutions: 30

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	17030644	C-A	HET	INTERGENIC
SBS	Chr1	17408895	G-T	HET	INTERGENIC
SBS	Chr1	19128884	G-A	HET	INTRON
SBS	Chr1	40418586	G-A	HOMO	INTERGENIC
SBS	Chr11	16129523	A-G	HOMO	UTR_3_PRIME
SBS	Chr11	456124	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g01860
SBS	Chr12	24907969	T-C	HET	INTERGENIC
SBS	Chr2	23415461	G-A	HOMO	INTERGENIC
SBS	Chr3	17138315	C-T	HET	SYNONYMOUS_CODING
SBS	Chr3	24544751	T-C	HET	INTERGENIC
SBS	Chr4	15265270	T-A	HET	INTERGENIC
SBS	Chr4	18853762	G-A	HET	INTERGENIC
SBS	Chr4	19266921	G-A	HET	INTERGENIC
SBS	Chr4	20405083	T-A	HET	INTRON
SBS	Chr4	25369105	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g42860
SBS	Chr4	25372721	A-T	HOMO	SYNONYMOUS_CODING
SBS	Chr4	25372722	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g42870
SBS	Chr5	14810957	G-A	HET	INTERGENIC
SBS	Chr5	15350868	C-A	HET	INTRON
SBS	Chr5	2399744	T-C	HET	INTERGENIC
SBS	Chr6	1474056	C-T	HET	INTERGENIC
SBS	Chr6	8629947	C-G	HET	INTERGENIC
SBS	Chr7	15735367	G-C	HOMO	INTRON
SBS	Chr7	9720622	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os07g16570
SBS	Chr8	23075387	C-T	HET	INTERGENIC
SBS	Chr9	13749395	T-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os09g23190
SBS	Chr9	15169825	G-T	HET	INTERGENIC
SBS	Chr9	3160507	C-T	HET	SYNONYMOUS_CODING
SBS	Chr9	6421488	G-A	HET	STOP_GAINED	LOC_Os09g11500
SBS	Chr9	7066170	C-A	HET	INTERGENIC

Deletions: 25

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	52551	52552	1
Deletion	Chr5	187239	187241	2
Deletion	Chr7	1949198	1949220	22
Deletion	Chr4	2371509	2371510	1	LOC_Os04g04914
Deletion	Chr8	4110582	4110589	7
Deletion	Chr7	7244964	7244976	12	LOC_Os07g12680
Deletion	Chr6	11220663	11220682	19	LOC_Os06g19660
Deletion	Chr2	11566975	11566978	3
Deletion	Chr9	11743653	11743671	18
Deletion	Chr6	11899390	11899391	1	LOC_Os06g20650
Deletion	Chr7	13106324	13106334	10
Deletion	Chr3	15219614	15219615	1
Deletion	Chr5	16478640	16478642	2	LOC_Os05g28180
Deletion	Chr1	16649001	16763000	114000	18
Deletion	Chr1	17023282	17023291	9
Deletion	Chr7	17031137	17031138	1
Deletion	Chr4	20653860	20653866	6	LOC_Os04g34100
Deletion	Chr10	21001457	21001459	2
Deletion	Chr8	21115621	21115624	3
Deletion	Chr11	21149409	21149410	1
Deletion	Chr5	21922412	21922438	26
Deletion	Chr6	24263236	24263238	2	LOC_Os06g40700
Deletion	Chr6	25874343	25874349	6
Deletion	Chr11	28177754	28177776	22
Deletion	Chr1	38637035	38637037	2

Insertions: 2

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr3	1248949	1248956	8
Insertion	Chr3	35802416	35802416	1

No Inversion

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	21388131	Chr5	28265408	LOC_Os05g49270
Translocation	Chr10	21389198	Chr5	28265405	2
Translocation	Chr4	34971501	Chr2	22517014

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