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Mutant Information

Variant Information

Single base substitutions: 40

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	10773039	A-G	HET	SYNONYMOUS_CODING
SBS	Chr1	14904229	T-A	HOMO	STOP_GAINED	LOC_Os01g26300
SBS	Chr1	23974703	G-A	HET	INTERGENIC
SBS	Chr1	24597979	A-C	HET	INTERGENIC
SBS	Chr1	27977696	G-A	HET	INTERGENIC
SBS	Chr1	30848799	C-T	HET	INTERGENIC
SBS	Chr1	32526199	G-T	HET	INTERGENIC
SBS	Chr1	34589623	G-A	HET	INTRON
SBS	Chr1	34959379	G-A	HET	INTERGENIC
SBS	Chr1	40397937	G-T	HET	INTRON
SBS	Chr11	14183016	G-A	HOMO	INTERGENIC
SBS	Chr11	17756024	T-C	HOMO	INTRON
SBS	Chr11	23767232	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os11g39870
SBS	Chr11	9360104	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os11g16870
SBS	Chr12	10797764	A-T	HET	INTERGENIC
SBS	Chr12	26002408	G-A	HET	UTR_3_PRIME
SBS	Chr12	3868274	A-T	HET	INTRON
SBS	Chr2	1081875	A-C	HET	INTRON
SBS	Chr2	12174384	A-C	HET	INTRON
SBS	Chr2	14559110	C-T	HET	UTR_3_PRIME
SBS	Chr2	14808992	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g25400
SBS	Chr2	1687553	T-A	HET	INTRON
SBS	Chr3	18866506	C-A	HET	INTERGENIC
SBS	Chr4	12485316	C-T	HET	INTRON
SBS	Chr4	26616605	C-T	HET	INTERGENIC
SBS	Chr5	19690737	C-T	HET	INTERGENIC
SBS	Chr5	21803414	G-T	HET	INTERGENIC
SBS	Chr5	27007965	T-A	HET	INTERGENIC
SBS	Chr5	6904346	G-A	HET	SYNONYMOUS_CODING
SBS	Chr5	6904347	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g12070
SBS	Chr6	16595957	T-A	HOMO	INTRON
SBS	Chr6	19960543	C-T	HET	UTR_3_PRIME
SBS	Chr6	88804	G-A	HET	INTERGENIC
SBS	Chr7	18438055	G-A	HOMO	INTERGENIC
SBS	Chr7	28201369	G-A	HET	INTERGENIC
SBS	Chr8	10519098	C-T	HET	SYNONYMOUS_CODING
SBS	Chr9	14308206	C-T	HOMO	INTRON
SBS	Chr9	21455978	G-A	HOMO	INTERGENIC
SBS	Chr9	7881792	T-C	HOMO	INTERGENIC
SBS	Chr9	9168944	C-T	HOMO	INTERGENIC

Deletions: 25

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	1071183	1071192	9
Deletion	Chr3	1321144	1321145	1	LOC_Os03g03130
Deletion	Chr3	1321871	1321873	2
Deletion	Chr10	1993496	1993503	7
Deletion	Chr12	2707747	2707753	6
Deletion	Chr10	6550087	6550088	1
Deletion	Chr2	7445310	7445312	2
Deletion	Chr12	8675058	8675066	8
Deletion	Chr4	8739129	8739131	2
Deletion	Chr10	8762863	8762864	1	LOC_Os10g17390
Deletion	Chr9	8823933	8823935	2
Deletion	Chr9	9735385	9735393	8
Deletion	Chr3	10169457	10169462	5
Deletion	Chr5	12092303	12092307	4	LOC_Os05g20610
Deletion	Chr1	12883923	12883925	2
Deletion	Chr6	13040447	13040471	24	LOC_Os06g22430
Deletion	Chr3	17109214	17109215	1
Deletion	Chr5	17341853	17341854	1
Deletion	Chr2	17801366	17801367	1
Deletion	Chr1	19052904	19052905	1
Deletion	Chr3	21070044	21070050	6
Deletion	Chr6	21829125	21829130	5
Deletion	Chr10	22440199	22440200	1
Deletion	Chr5	27863621	27863627	6	LOC_Os05g48600
Deletion	Chr4	29620042	29620043	1

Insertions: 14

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	18728645	18728645	1
Insertion	Chr11	18444205	18444205	1
Insertion	Chr11	9824913	9824913	1
Insertion	Chr12	22054647	22054647	1
Insertion	Chr12	3701952	3701985	34
Insertion	Chr2	11684888	11684911	24
Insertion	Chr3	14635456	14635511	56
Insertion	Chr3	5561828	5561845	18
Insertion	Chr4	26774142	26774142	1
Insertion	Chr4	29138315	29138365	51
Insertion	Chr5	12017251	12017271	21
Insertion	Chr6	20454098	20454098	1
Insertion	Chr7	3110897	3110897	1
Insertion	Chr8	20333407	20333407	1	LOC_Os08g32800

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	4010415	4010492
Inversion	Chr12	7449852	7450116
Inversion	Chr9	21686027	21686191	2
Inversion	Chr2	23078423	23078533

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2
Translocation	Chr6	1800422	Chr1	34373468
Translocation	Chr3	34304233	Chr2	35453588
Translocation	Chr3	34304234	Chr2	35432019

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