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| Mutant Information |
|---|
| Mutant Name | FN444-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN444-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 16
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 29339548 | G-T | HOMO | INTERGENIC | |
| SBS | Chr1 | 4687149 | C-A | HET | INTERGENIC | |
| SBS | Chr10 | 4899453 | A-C | HOMO | INTERGENIC | |
| SBS | Chr11 | 14183016 | G-A | HOMO | INTERGENIC | |
| SBS | Chr12 | 22916353 | C-T | HET | INTERGENIC | |
| SBS | Chr12 | 23779575 | G-A | HET | SYNONYMOUS_CODING | |
| SBS | Chr12 | 4519830 | C-A | HET | INTERGENIC | |
| SBS | Chr2 | 10779472 | A-T | HET | INTRON | |
| SBS | Chr3 | 35920872 | C-G | HET | INTERGENIC | |
| SBS | Chr4 | 5951805 | C-T | HET | INTERGENIC | |
| SBS | Chr5 | 20401049 | A-G | HOMO | INTERGENIC | |
| SBS | Chr6 | 16595957 | T-A | HET | INTRON | |
| SBS | Chr6 | 20565593 | G-A | HET | INTERGENIC | |
| SBS | Chr6 | 5876713 | C-T | HET | INTERGENIC | |
| SBS | Chr7 | 10361470 | A-G | HOMO | NON_SYNONYMOUS_CODING | LOC_Os07g17530 |
| SBS | Chr8 | 26083102 | C-A | HOMO | INTERGENIC |
Deletions: 23
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr12 | 312001 | 343000 | 31000 | 5 |
| Deletion | Chr11 | 855374 | 855375 | 1 | |
| Deletion | Chr9 | 1386945 | 1387024 | 79 | LOC_Os09g02950 |
| Deletion | Chr12 | 2505052 | 2505059 | 7 | |
| Deletion | Chr1 | 3399959 | 3399960 | 1 | LOC_Os01g07200 |
| Deletion | Chr4 | 6603001 | 6614000 | 11000 | 2 |
| Deletion | Chr12 | 6675694 | 6675695 | 1 | |
| Deletion | Chr5 | 7230459 | 7230469 | 10 | |
| Deletion | Chr10 | 7430805 | 7430806 | 1 | |
| Deletion | Chr2 | 12180952 | 12180956 | 4 | |
| Deletion | Chr12 | 12697452 | 12697453 | 1 | LOC_Os12g22500 |
| Deletion | Chr10 | 14559475 | 14559484 | 9 | LOC_Os10g28050 |
| Deletion | Chr5 | 17454547 | 17454595 | 48 | |
| Deletion | Chr9 | 17655087 | 17655088 | 1 | |
| Deletion | Chr6 | 18878097 | 18878099 | 2 | LOC_Os06g32470 |
| Deletion | Chr4 | 19193696 | 19193720 | 24 | |
| Deletion | Chr1 | 19240588 | 19240597 | 9 | |
| Deletion | Chr3 | 21754493 | 21754494 | 1 | |
| Deletion | Chr5 | 24107087 | 24107106 | 19 | |
| Deletion | Chr6 | 25192547 | 25192548 | 1 | |
| Deletion | Chr5 | 29491280 | 29491282 | 2 | LOC_Os05g51420 |
| Deletion | Chr4 | 35285792 | 35285809 | 17 | LOC_Os04g59360 |
| Deletion | Chr1 | 36772271 | 36772277 | 6 | LOC_Os01g63470 |
Insertions: 5
Inversions: 5
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr12 | 263013 | 356783 | LOC_Os12g01590 |
| Inversion | Chr12 | 312312 | 356778 | LOC_Os12g01590 |
| Inversion | Chr5 | 17230185 | 17485366 | LOC_Os05g29780 |
| Inversion | Chr11 | 20667742 | 21300825 | 2 |
| Inversion | Chr11 | 24996270 | 25225748 | LOC_Os11g41940 |
Translocations: 3
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr8 | 4312853 | Chr4 | 25107855 | |
| Translocation | Chr5 | 10868092 | Chr2 | 19406241 | 2 |
| Translocation | Chr11 | 23447786 | Chr4 | 32134020 | LOC_Os04g53920 |