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Mutant Information

Variant Information

Single base substitutions: 30

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2929771	G-C	HOMO	INTERGENIC
SBS	Chr1	41751273	C-T	HOMO	INTERGENIC
SBS	Chr2	8420085	T-A	HOMO	INTERGENIC
SBS	Chr2	11717785	G-A	HET	INTRON
SBS	Chr2	13985068	T-A	HET	INTRON
SBS	Chr2	20455315	C-T	HOMO	INTERGENIC
SBS	Chr2	26267546	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g43530
SBS	Chr3	7845151	G-A	HET	SYNONYMOUS_CODING
SBS	Chr3	11968249	C-T	HET	SYNONYMOUS_CODING
SBS	Chr3	12610149	G-T	HET	INTERGENIC
SBS	Chr5	15495404	G-A	HOMO	INTRON
SBS	Chr5	21554324	C-T	HOMO	INTERGENIC
SBS	Chr5	26333603	T-C	HOMO	INTERGENIC
SBS	Chr5	26904105	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr6	8615563	T-G	HOMO	INTERGENIC
SBS	Chr6	29654701	G-A	HOMO	INTERGENIC
SBS	Chr7	1231541	A-T	HET	INTRON
SBS	Chr7	7916027	A-C	HOMO	INTERGENIC
SBS	Chr8	1504507	T-C	HET	SYNONYMOUS_CODING
SBS	Chr8	9927934	C-T	HOMO	INTERGENIC
SBS	Chr8	19356137	C-T	HET	INTERGENIC
SBS	Chr9	9620534	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os09g15750
SBS	Chr9	15432138	G-A	HET	SYNONYMOUS_CODING
SBS	Chr9	17739202	G-C	HET	INTERGENIC
SBS	Chr11	10117622	G-T	HET	INTRON
SBS	Chr11	12293658	A-G	HET	INTERGENIC
SBS	Chr11	18978706	G-T	HET	INTERGENIC
SBS	Chr11	20331787	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g34700
SBS	Chr12	4650294	A-G	HET	INTERGENIC
SBS	Chr12	5191200	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g09800

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	5805938	5805951	13
Deletion	Chr11	6334850	6334851	1
Deletion	Chr9	6600115	6600116	1
Deletion	Chr12	7878131	7878132	1
Deletion	Chr4	9530002	9530003	1
Deletion	Chr4	9576469	9576472	3	LOC_Os04g17500
Deletion	Chr1	11489604	11489605	1
Deletion	Chr7	12175990	12175991	1
Deletion	Chr3	13390813	13390814	1
Deletion	Chr10	19366362	19366365	3
Deletion	Chr12	21384362	21384363	1	LOC_Os12g35140
Deletion	Chr11	22068009	22068010	1
Deletion	Chr2	22703382	22703418	36	LOC_Os02g37620
Deletion	Chr3	26857807	26857808	1
Deletion	Chr5	27962440	27962441	1
Deletion	Chr6	28421363	28421365	2
Deletion	Chr5	29701218	29701219	1
Deletion	Chr3	30152024	30152025	1	LOC_Os03g52570
Deletion	Chr1	37980035	37980038	3

Insertions: 18

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	2468084	2468085	2
Insertion	Chr1	5463165	5463234	70
Insertion	Chr1	41191390	41191390	1
Insertion	Chr2	6855260	6855260	1
Insertion	Chr2	17799163	17799163	1	LOC_Os02g29950
Insertion	Chr3	16393918	16393918	1
Insertion	Chr4	1584391	1584392	2
Insertion	Chr4	3647233	3647313	81
Insertion	Chr5	1026491	1026491	1
Insertion	Chr6	21857776	21857777	2
Insertion	Chr6	26014373	26014373	1	LOC_Os06g43290
Insertion	Chr7	3181445	3181445	1
Insertion	Chr8	24594342	24594342	1
Insertion	Chr9	8251193	8251193	1
Insertion	Chr11	11262675	11262730	56
Insertion	Chr11	21379748	21379749	2
Insertion	Chr12	15291864	15291864	1
Insertion	Chr12	20934729	20934797	69

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	3237793	3238003
Inversion	Chr2	8341053	8476723	LOC_Os02g14929
Inversion	Chr2	8341063	8476732	LOC_Os02g14929
Inversion	Chr11	9280201	9555662	LOC_Os11g17180
Inversion	Chr11	9541613	9555654	LOC_Os11g17180
Inversion	Chr1	25047219	25047530

No Translocation

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