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Mutant Information

Variant Information

Single base substitutions: 41

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	17889747	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g32630
SBS	Chr1	20948572	C-A	HET	INTERGENIC
SBS	Chr1	22805242	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os01g40390
SBS	Chr2	4807587	G-A	HET	INTERGENIC
SBS	Chr2	6616334	G-T	HET	SYNONYMOUS_CODING
SBS	Chr2	6866756	A-G	HET	INTERGENIC
SBS	Chr2	12254828	A-T	HET	INTERGENIC
SBS	Chr2	17635508	A-T	HET	INTERGENIC
SBS	Chr2	20096803	G-T	HET	INTERGENIC
SBS	Chr2	23192905	C-A	HET	INTERGENIC
SBS	Chr2	25002916	T-A	HET	INTERGENIC
SBS	Chr2	32802281	C-T	HET	INTERGENIC
SBS	Chr2	34601020	G-A	HET	INTRON
SBS	Chr3	7730173	C-T	HET	INTERGENIC
SBS	Chr3	22843833	C-A	HET	INTERGENIC
SBS	Chr3	33122697	C-T	HOMO	INTERGENIC
SBS	Chr3	33128847	C-T	HET	INTERGENIC
SBS	Chr3	33585921	C-T	HET	INTERGENIC
SBS	Chr4	12712150	C-A	HET	INTERGENIC
SBS	Chr4	23347816	C-T	HET	INTERGENIC
SBS	Chr4	27442807	G-A	HOMO	INTERGENIC
SBS	Chr5	5199520	C-T	HET	INTRON
SBS	Chr5	20433043	C-A	HET	INTERGENIC
SBS	Chr5	24339431	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g41560
SBS	Chr5	24995832	A-G	HET	INTERGENIC
SBS	Chr5	25429082	C-T	HET	INTERGENIC
SBS	Chr6	4086876	G-A	HET	INTERGENIC
SBS	Chr6	6740023	G-T	HET	INTERGENIC
SBS	Chr6	11887272	T-A	HET	INTERGENIC
SBS	Chr6	15641448	C-T	HOMO	INTERGENIC
SBS	Chr7	1266981	A-C	HET	INTERGENIC
SBS	Chr7	10608673	C-T	HOMO	INTERGENIC
SBS	Chr7	13694634	C-T	HET	INTERGENIC
SBS	Chr9	533220	C-A	HET	INTERGENIC
SBS	Chr9	4367332	C-G	HOMO	INTERGENIC
SBS	Chr10	4826368	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g08920
SBS	Chr11	16343272	C-T	HET	INTERGENIC
SBS	Chr11	17565779	C-T	HOMO	INTERGENIC
SBS	Chr11	22017715	T-C	HET	INTRON
SBS	Chr12	10844427	G-A	HOMO	INTERGENIC
SBS	Chr12	25918087	C-T	HET	INTERGENIC

Deletions: 43

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	688956	688958	2
Deletion	Chr4	1731385	1731387	2
Deletion	Chr10	2010069	2010072	3
Deletion	Chr11	3141164	3141167	3
Deletion	Chr10	3365599	3365605	6	LOC_Os10g06550
Deletion	Chr11	3400143	3400144	1
Deletion	Chr2	3683367	3683368	1
Deletion	Chr10	4386314	4386352	38
Deletion	Chr7	4494407	4494410	3
Deletion	Chr5	4508054	4508055	1
Deletion	Chr1	4555197	4555198	1
Deletion	Chr5	6552988	6552997	9
Deletion	Chr5	6708366	6708370	4
Deletion	Chr3	8997131	8997132	1
Deletion	Chr6	9209001	9236000	27000	6
Deletion	Chr12	9527773	9527775	2
Deletion	Chr3	10009361	10009362	1	LOC_Os03g17980
Deletion	Chr1	10178376	10178503	127
Deletion	Chr9	10237461	10237462	1
Deletion	Chr9	10285964	10286018	54
Deletion	Chr5	10291420	10291421	1
Deletion	Chr11	11526809	11526857	48	LOC_Os11g20030
Deletion	Chr10	11924953	11924954	1
Deletion	Chr4	12108102	12108103	1
Deletion	Chr7	12181358	12181359	1
Deletion	Chr10	12801431	12801445	14
Deletion	Chr7	14059437	14059442	5
Deletion	Chr4	14619868	14619885	17
Deletion	Chr12	15579584	15579588	4
Deletion	Chr7	17443526	17443527	1
Deletion	Chr11	17717176	17717177	1	LOC_Os11g30470
Deletion	Chr7	18094445	18094516	71	LOC_Os07g30580
Deletion	Chr8	18328973	18328974	1
Deletion	Chr10	18899571	18899572	1
Deletion	Chr8	18925483	18925487	4	LOC_Os08g30680
Deletion	Chr8	21061846	21061847	1
Deletion	Chr1	22804903	22804904	1
Deletion	Chr5	22850177	22850178	1
Deletion	Chr7	27669107	27669116	9
Deletion	Chr6	28219651	28219653	2
Deletion	Chr3	29485860	29485861	1
Deletion	Chr2	34591765	34591766	1
Deletion	Chr4	35496385	35496500	115

Insertions: 22

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr9	3738515	3738516	2
Insertion	Chr1	2165577	2165577	1
Insertion	Chr1	28379722	28379722	1
Insertion	Chr2	3941157	3941157	1
Insertion	Chr2	15752183	15752183	1
Insertion	Chr2	19156277	19156322	46
Insertion	Chr3	32309380	32309380	1
Insertion	Chr4	3933389	3933389	1
Insertion	Chr4	5407870	5407871	2
Insertion	Chr5	4034190	4034190	1
Insertion	Chr5	12739782	12739782	1
Insertion	Chr5	18991941	18991970	30
Insertion	Chr5	20540390	20540390	1
Insertion	Chr6	30055415	30055415	1
Insertion	Chr7	21916097	21916098	2
Insertion	Chr7	22434379	22434379	1
Insertion	Chr10	5512865	5512865	1
Insertion	Chr10	15383034	15383034	1
Insertion	Chr11	13435189	13435230	42
Insertion	Chr11	23637084	23637084	1
Insertion	Chr12	5786691	5786703	13
Insertion	Chr12	6827366	6827366	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	32700740	32753284	LOC_Os04g54980
Inversion	Chr4	32700741	32753288	LOC_Os04g54980

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	5375715	Chr1	18178348
Translocation	Chr5	5375720	Chr1	18178200
Translocation	Chr9	11245225	Chr6	9250514	LOC_Os06g19690
Translocation	Chr9	11262745	Chr6	9250522

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