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Mutant Information

Variant Information

Single base substitutions: 27

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	27803999	C-T	HET	INTERGENIC
SBS	Chr1	3998535	G-A	HET	INTERGENIC
SBS	Chr1	7253270	G-T	HOMO	INTRON
SBS	Chr10	10174613	T-C	HET	UTR_3_PRIME
SBS	Chr10	224239	C-A	HOMO	INTERGENIC
SBS	Chr11	24955228	C-T	HET	INTERGENIC
SBS	Chr11	26801896	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g44340
SBS	Chr11	9592985	G-T	HOMO	INTERGENIC
SBS	Chr12	11807953	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os12g20240
SBS	Chr12	3017037	A-C	HOMO	INTERGENIC
SBS	Chr2	24540359	G-A	HOMO	INTERGENIC
SBS	Chr2	28031153	G-A	HET	INTRON
SBS	Chr3	10691617	C-G	HET	INTERGENIC
SBS	Chr3	13937214	A-T	HET	INTERGENIC
SBS	Chr3	16841162	T-A	HET	INTERGENIC
SBS	Chr3	36225830	A-T	HET	INTERGENIC
SBS	Chr3	7709936	G-C	HET	SYNONYMOUS_CODING
SBS	Chr4	8908813	G-C	HOMO	INTERGENIC
SBS	Chr5	10983196	A-G	HOMO	SYNONYMOUS_CODING
SBS	Chr5	10983197	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g18920
SBS	Chr5	11091900	T-G	HOMO	INTERGENIC
SBS	Chr5	2403371	G-C	HET	INTERGENIC
SBS	Chr8	21403442	G-T	HOMO	UTR_5_PRIME
SBS	Chr8	21403443	A-T	HOMO	UTR_5_PRIME
SBS	Chr8	21403444	A-T	HOMO	UTR_5_PRIME
SBS	Chr9	12620366	A-T	HET	INTERGENIC
SBS	Chr9	13392623	T-C	HET	INTRON

Deletions: 31

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	629354	629355	1
Deletion	Chr11	1897182	1897184	2
Deletion	Chr12	2970452	2970453	1
Deletion	Chr4	3757023	3757024	1	LOC_Os04g07090
Deletion	Chr4	4718001	4736000	18000	5
Deletion	Chr12	4797255	4797257	2	LOC_Os12g09190
Deletion	Chr4	5681837	5681843	6
Deletion	Chr2	6894596	6894597	1	LOC_Os02g13010
Deletion	Chr9	7424914	7424915	1
Deletion	Chr3	7529439	7529440	1	LOC_Os03g13880
Deletion	Chr8	7848616	7848617	1
Deletion	Chr4	10255009	10255016	7	LOC_Os04g18570
Deletion	Chr4	10444391	10444481	90
Deletion	Chr12	12625247	12625248	1
Deletion	Chr8	15189784	15189785	1	LOC_Os08g25020
Deletion	Chr8	16999177	16999178	1
Deletion	Chr5	17269199	17269200	1
Deletion	Chr10	18932212	18932216	4
Deletion	Chr6	20103193	20103198	5
Deletion	Chr7	20155953	20155968	15
Deletion	Chr11	20594436	20594479	43
Deletion	Chr1	21202648	21202649	1
Deletion	Chr4	21662901	21662912	11	LOC_Os04g35560
Deletion	Chr3	24139386	24139388	2
Deletion	Chr5	24140554	24140556	2	LOC_Os05g41220
Deletion	Chr8	24487079	24487091	12
Deletion	Chr12	25398084	25398116	32
Deletion	Chr3	27776916	27776920	4
Deletion	Chr2	28494364	28494437	73
Deletion	Chr1	28807960	28807969	9
Deletion	Chr1	31379690	31379691	1

Insertions: 14

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr10	8096577	8096587	11
Insertion	Chr11	11173699	11173699	1
Insertion	Chr12	19008062	19008067	6
Insertion	Chr3	10745204	10745204	1
Insertion	Chr4	25490476	25490476	1
Insertion	Chr4	32111892	32111892	1
Insertion	Chr5	21338291	21338291	1	LOC_Os05g36040
Insertion	Chr5	29932065	29932065	1
Insertion	Chr7	18061350	18061363	14
Insertion	Chr7	2834866	2834866	1
Insertion	Chr8	2285494	2285494	1
Insertion	Chr9	1827873	1827873	1
Insertion	Chr9	2067615	2067620	6
Insertion	Chr9	21123184	21123184	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	7254952	8197394
Inversion	Chr9	19752813	19876388	LOC_Os09g33500
Inversion	Chr9	19752842	19876401	LOC_Os09g33500

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	20153712	Chr6	7254943	LOC_Os09g34130
Translocation	Chr9	20154156	Chr6	8197391	LOC_Os09g34130

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