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Mutant Information

Variant Information

Single base substitutions: 32

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3136810	G-A	HET	SYNONYMOUS_CODING
SBS	Chr1	21160539	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g37825
SBS	Chr1	35045078	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g60620
SBS	Chr2	17026277	C-T	HET	SYNONYMOUS_CODING
SBS	Chr2	17559029	C-T	HET	INTERGENIC
SBS	Chr2	19595861	G-A	HOMO	INTERGENIC
SBS	Chr2	24633814	G-A	HOMO	INTERGENIC
SBS	Chr3	8957525	A-T	HOMO	INTERGENIC
SBS	Chr3	22697242	C-T	HET	INTERGENIC
SBS	Chr3	33657222	C-T	HET	INTERGENIC
SBS	Chr3	35849607	A-C	HET	INTRON
SBS	Chr4	5998762	C-T	HET	INTERGENIC
SBS	Chr4	6772989	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g12260
SBS	Chr4	7540165	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr4	24653297	G-A	HET	INTERGENIC
SBS	Chr4	30535965	C-T	HET	SYNONYMOUS_CODING
SBS	Chr5	5498490	C-T	HET	INTERGENIC
SBS	Chr5	16448270	G-A	HET	STOP_GAINED	LOC_Os05g28120
SBS	Chr5	20713290	G-T	HET	INTERGENIC
SBS	Chr5	28219369	G-T	HET	INTERGENIC
SBS	Chr6	4888989	C-T	HET	SYNONYMOUS_CODING
SBS	Chr6	11080609	T-A	HOMO	INTERGENIC
SBS	Chr6	15908368	C-A	HOMO	INTERGENIC
SBS	Chr7	6485608	T-G	HET	INTERGENIC
SBS	Chr7	9516043	G-A	HOMO	INTERGENIC
SBS	Chr7	19351877	G-T	HET	INTERGENIC
SBS	Chr9	22833103	G-A	HET	INTRON
SBS	Chr10	3198927	A-G	HET	INTERGENIC
SBS	Chr10	5104504	G-T	HET	INTERGENIC
SBS	Chr11	14816189	T-C	HOMO	INTRON
SBS	Chr11	22278435	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g37700
SBS	Chr12	9229162	T-C	HOMO	INTERGENIC

Deletions: 46

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	1315001	1334000	19000	5
Deletion	Chr11	1476322	1476323	1
Deletion	Chr10	1493001	1595000	102000	16
Deletion	Chr2	1504979	1504980	1
Deletion	Chr11	2654179	2654180	1
Deletion	Chr12	2792546	2792547	1
Deletion	Chr10	3303955	3303956	1	LOC_Os10g06430
Deletion	Chr5	4078674	4078675	1
Deletion	Chr6	4568073	4568077	4
Deletion	Chr9	4640223	4640224	1
Deletion	Chr5	5098881	5098886	5
Deletion	Chr11	5830276	5830288	12
Deletion	Chr6	6139360	6139361	1
Deletion	Chr10	6916854	6916856	2
Deletion	Chr7	7250670	7250691	21
Deletion	Chr2	7873713	7873714	1
Deletion	Chr12	8512534	8512535	1
Deletion	Chr5	9514456	9514457	1
Deletion	Chr9	11674405	11674406	1
Deletion	Chr7	11986830	11986833	3	LOC_Os07g20720
Deletion	Chr11	12093572	12093575	3
Deletion	Chr7	12248430	12248590	160
Deletion	Chr4	14391659	14391660	1
Deletion	Chr7	17385492	17385493	1
Deletion	Chr10	17848001	18183000	335000	32
Deletion	Chr10	18062846	18062874	28
Deletion	Chr10	18201001	18302000	101000	18
Deletion	Chr11	18214172	18214173	1
Deletion	Chr12	18795655	18795656	1
Deletion	Chr10	21173471	21173476	5
Deletion	Chr5	21509511	21509512	1
Deletion	Chr2	22797259	22797282	23
Deletion	Chr8	24526936	24526937	1	LOC_Os08g38800
Deletion	Chr1	24826560	24826563	3
Deletion	Chr5	24917968	24917969	1
Deletion	Chr12	25678009	25678015	6	LOC_Os12g41450
Deletion	Chr5	25899944	25899946	2
Deletion	Chr5	26451369	26451370	1
Deletion	Chr4	27002727	27002728	1
Deletion	Chr11	27075273	27075274	1
Deletion	Chr1	27352878	27352889	11
Deletion	Chr3	27364357	27364374	17
Deletion	Chr4	28567804	28567805	1
Deletion	Chr6	29273253	29273254	1
Deletion	Chr3	31640656	31640677	21
Deletion	Chr1	34011951	34011960	9

Insertions: 44

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	23701485	23701486	2
Insertion	Chr1	23978506	23978509	4
Insertion	Chr1	40326882	40326884	3
Insertion	Chr3	7879046	7879046	1
Insertion	Chr4	6138151	6138151	1
Insertion	Chr9	19488586	19488587	2
Insertion	Chr12	5559813	5559817	5
Insertion	Chr1	9031972	9031972	1
Insertion	Chr1	12346137	12346137	1
Insertion	Chr1	32723184	32723184	1
Insertion	Chr3	3764594	3764594	1
Insertion	Chr3	4143497	4143497	1
Insertion	Chr3	17521048	17521048	1
Insertion	Chr3	32241562	32241562	1
Insertion	Chr4	2332045	2332045	1
Insertion	Chr4	6552732	6552732	1
Insertion	Chr4	10471975	10471975	1
Insertion	Chr4	22704544	22704544	1
Insertion	Chr4	23166864	23166864	1
Insertion	Chr4	31847295	31847295	1
Insertion	Chr5	1634299	1634299	1
Insertion	Chr5	6363883	6363938	56
Insertion	Chr5	8183528	8183528	1
Insertion	Chr5	11217752	11217752	1
Insertion	Chr5	11681775	11681775	1
Insertion	Chr5	15726091	15726119	29
Insertion	Chr5	17598412	17598412	1
Insertion	Chr5	29179565	29179565	1
Insertion	Chr6	12548252	12548252	1
Insertion	Chr7	9803253	9803253	1
Insertion	Chr8	1323309	1323309	1
Insertion	Chr8	7317272	7317274	3
Insertion	Chr8	14469275	14469275	1
Insertion	Chr9	576355	576356	2
Insertion	Chr10	6931474	6931474	1
Insertion	Chr10	8357868	8357868	1
Insertion	Chr10	20234735	20234736	2
Insertion	Chr11	581650	581661	12
Insertion	Chr11	1032498	1032498	1
Insertion	Chr11	16183446	16183446	1
Insertion	Chr12	8453895	8453896	2
Insertion	Chr12	9852480	9852481	2
Insertion	Chr12	15228442	15228455	14	LOC_Os12g26140
Insertion	Chr12	22682846	22682846	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	24684608	24730205

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	1315288	Chr4	20910470	2
Translocation	Chr10	1315401	Chr4	20910469	2
Translocation	Chr9	8711177	Chr8	15782154
Translocation	Chr10	10355522	Chr8	15782149	LOC_Os08g16910
Translocation	Chr9	16416495	Chr2	2673873
Translocation	Chr4	19119507	Chr2	22665665
Translocation	Chr4	31826025	Chr2	4174006	LOC_Os04g53450

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