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Mutant Information

Mutant Name	FN4451-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4451-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 46

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11119499	T-G	HET	INTERGENIC
SBS	Chr1	1404541	A-G	HOMO	UTR_5_PRIME
SBS	Chr1	14721222	C-G	HET	INTERGENIC
SBS	Chr1	25823236	G-A	HOMO	INTERGENIC
SBS	Chr1	30406734	C-G	HET	INTERGENIC
SBS	Chr10	14897547	T-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g28600
SBS	Chr10	16676650	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os10g31810
SBS	Chr10	22263943	C-T	HET	INTERGENIC
SBS	Chr10	3239198	C-G	HET	INTRON
SBS	Chr11	15867860	C-T	HOMO	INTERGENIC
SBS	Chr11	25509166	C-T	HET	INTERGENIC
SBS	Chr12	1418747	G-T	HET	SPLICE_SITE_ACCEPTOR	LOC_Os12g03554
SBS	Chr12	14657381	G-A	HET	INTERGENIC
SBS	Chr12	212444	T-A	HOMO	START_GAINED
SBS	Chr12	570322	G-T	HET	INTRON
SBS	Chr2	18554218	A-C	HET	SPLICE_SITE_REGION
SBS	Chr2	18554219	A-T	HET	SPLICE_SITE_REGION
SBS	Chr2	27114059	G-T	HET	INTERGENIC
SBS	Chr2	31329322	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g51200
SBS	Chr2	5621308	G-T	HOMO	INTERGENIC
SBS	Chr2	6218963	C-A	HET	SYNONYMOUS_CODING
SBS	Chr2	6218964	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g11990
SBS	Chr3	11370929	G-A	HET	INTERGENIC
SBS	Chr3	19552100	T-A	HOMO	INTERGENIC
SBS	Chr3	19724125	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g35580
SBS	Chr4	19649542	A-T	HOMO	INTERGENIC
SBS	Chr4	25860580	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g43700
SBS	Chr4	33841504	C-T	HET	INTRON
SBS	Chr4	8206272	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g14640
SBS	Chr4	8509171	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g15650
SBS	Chr5	16689343	T-G	HET	INTRON
SBS	Chr5	20075879	C-T	HET	INTERGENIC
SBS	Chr5	26736803	G-A	HET	INTERGENIC
SBS	Chr5	28187706	C-G	HET	INTRON
SBS	Chr5	8957769	A-T	HET	INTRON
SBS	Chr6	11299436	C-T	HET	INTERGENIC
SBS	Chr6	16711870	T-A	HET	INTRON
SBS	Chr6	17868014	C-T	HET	INTERGENIC
SBS	Chr6	28530427	G-A	HET	INTERGENIC
SBS	Chr6	6430226	T-A	HOMO	INTERGENIC
SBS	Chr6	7172946	G-T	HET	INTERGENIC
SBS	Chr8	10899085	C-G	HET	INTERGENIC
SBS	Chr8	15543289	G-T	HET	INTERGENIC
SBS	Chr8	17347337	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g28410
SBS	Chr8	21796786	C-A	HET	INTERGENIC
SBS	Chr9	8872080	T-C	HET	INTRON

Deletions: 41

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	876132	876133	1
Deletion	Chr1	1407753	1407764	11
Deletion	Chr6	2376367	2376370	3
Deletion	Chr2	2604297	2604298	1
Deletion	Chr10	6714571	6714573	2
Deletion	Chr6	7420450	7420451	1
Deletion	Chr6	7813942	7813945	3
Deletion	Chr10	7930393	7930394	1
Deletion	Chr8	8282406	8282407	1
Deletion	Chr4	8419578	8419593	15	LOC_Os04g14980
Deletion	Chr12	10057552	10057558	6
Deletion	Chr6	10225622	10225638	16	LOC_Os06g17610
Deletion	Chr8	11292063	11292076	13
Deletion	Chr1	11485411	11485413	2
Deletion	Chr9	11554257	11554258	1
Deletion	Chr11	12570944	12570946	2
Deletion	Chr4	12629424	12629425	1
Deletion	Chr9	13669324	13669331	7
Deletion	Chr11	13672285	13672296	11
Deletion	Chr10	13822428	13822429	1
Deletion	Chr2	14097283	14097287	4
Deletion	Chr3	15054865	15054867	2
Deletion	Chr11	15112744	15112752	8
Deletion	Chr9	15662062	15662068	6
Deletion	Chr3	15764436	15764475	39
Deletion	Chr2	16807574	16807582	8
Deletion	Chr9	16933535	16933550	15
Deletion	Chr3	17364983	17364986	3	LOC_Os03g30450
Deletion	Chr11	18081494	18081495	1
Deletion	Chr7	20556386	20556387	1
Deletion	Chr10	21576276	21576277	1	LOC_Os10g40260
Deletion	Chr7	22756988	22756991	3	LOC_Os07g37920
Deletion	Chr2	23617523	23617524	1
Deletion	Chr7	24099149	24099158	9
Deletion	Chr3	25117066	25117081	15
Deletion	Chr3	26590549	26590550	1
Deletion	Chr1	26635975	26635976	1
Deletion	Chr8	26839415	26839416	1
Deletion	Chr3	28802408	28802409	1
Deletion	Chr6	30056080	30056081	1
Deletion	Chr1	37824671	37824672	1

Insertions: 14

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	15748193	15748193	1
Insertion	Chr1	34094512	34094512	1
Insertion	Chr1	43134513	43134518	6
Insertion	Chr10	4766308	4766310	3
Insertion	Chr12	12585978	12585978	1
Insertion	Chr3	34016106	34016106	1
Insertion	Chr3	7727509	7727509	1
Insertion	Chr4	16473545	16473549	5	LOC_Os04g27890
Insertion	Chr5	10026945	10026945	1
Insertion	Chr5	8832919	8832920	2
Insertion	Chr6	22348696	22348748	53
Insertion	Chr6	25502789	25502789	1
Insertion	Chr8	3405061	3405062	2
Insertion	Chr9	7426700	7426700	1

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	5038583	5286668
Inversion	Chr12	5038589	5286680
Inversion	Chr1	30766369	31267170	LOC_Os01g53570
Inversion	Chr1	30766373	31267172	LOC_Os01g53570
Inversion	Chr1	37738987	37739109

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr2	19802229	Chr1	33760538

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