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Mutant Information

Mutant Name	FN4452-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4452-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 43

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13114798	G-A	HET	INTRON
SBS	Chr1	16097119	C-T	HET	INTERGENIC
SBS	Chr1	18907745	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g34300
SBS	Chr1	20805807	G-A	HET	UTR_5_PRIME
SBS	Chr1	27726787	G-A	HET	SYNONYMOUS_CODING
SBS	Chr1	5995170	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr1	9131492	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os01g16160
SBS	Chr10	21229165	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os10g39730
SBS	Chr11	18639710	A-G	HET	INTRON
SBS	Chr11	24113501	C-T	HET	INTERGENIC
SBS	Chr11	9316026	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os11g16790
SBS	Chr12	14454697	C-T	HET	INTRON
SBS	Chr12	14454698	A-T	HET	INTRON
SBS	Chr12	4526008	C-T	HET	INTERGENIC
SBS	Chr12	495163	C-T	HET	UTR_5_PRIME
SBS	Chr12	495165	C-T	HET	UTR_5_PRIME
SBS	Chr12	9255327	C-A	HET	SYNONYMOUS_CODING
SBS	Chr2	12729312	T-A	HOMO	INTERGENIC
SBS	Chr2	13987763	G-T	HET	INTERGENIC
SBS	Chr2	14365697	C-T	HOMO	INTERGENIC
SBS	Chr2	3205883	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os02g06410
SBS	Chr3	17045334	T-A	HET	INTERGENIC
SBS	Chr3	17629087	C-T	HET	INTERGENIC
SBS	Chr4	13687428	T-C	HOMO	INTRON
SBS	Chr4	14054650	G-C	HOMO	INTERGENIC
SBS	Chr4	15061784	T-C	HOMO	INTERGENIC
SBS	Chr4	28380055	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g47830
SBS	Chr5	17693077	C-T	HOMO	INTERGENIC
SBS	Chr6	21294406	A-G	HET	INTERGENIC
SBS	Chr7	15043748	C-A	HET	INTERGENIC
SBS	Chr7	19090798	G-A	HET	INTERGENIC
SBS	Chr7	2906265	A-G	HET	INTERGENIC
SBS	Chr8	16836144	C-G	HET	INTRON
SBS	Chr8	17096321	A-T	HET	INTERGENIC
SBS	Chr8	17682001	G-A	HET	INTERGENIC
SBS	Chr8	5779819	T-G	HET	INTERGENIC
SBS	Chr9	10856353	C-T	HET	INTERGENIC
SBS	Chr9	14873361	A-T	HET	INTRON
SBS	Chr9	22211556	A-T	HOMO	INTERGENIC
SBS	Chr9	22211564	G-T	HOMO	INTERGENIC
SBS	Chr9	22211565	C-T	HOMO	INTERGENIC
SBS	Chr9	4886230	A-G	HOMO	INTRON
SBS	Chr9	9015070	G-C	HET	INTERGENIC

Deletions: 28

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	169267	169269	2
Deletion	Chr12	483221	483227	6
Deletion	Chr12	972001	1055000	83000	17
Deletion	Chr10	2038894	2038896	2	LOC_Os10g04316
Deletion	Chr10	3752062	3752099	37	LOC_Os10g07150
Deletion	Chr1	3848448	3848449	1
Deletion	Chr10	4908267	4908309	42
Deletion	Chr1	5939001	6088000	149000	21
Deletion	Chr11	6425327	6425328	1
Deletion	Chr6	7819881	7819882	1
Deletion	Chr9	10162636	10162637	1
Deletion	Chr4	13876680	13876681	1
Deletion	Chr12	14130368	14130374	6
Deletion	Chr12	14686558	14686559	1
Deletion	Chr11	15549534	15549543	9
Deletion	Chr12	16170399	16170400	1
Deletion	Chr9	18590322	18590323	1
Deletion	Chr11	18875118	18875119	1
Deletion	Chr5	19619183	19619192	9
Deletion	Chr12	19778013	19778078	65
Deletion	Chr9	20351507	20351508	1
Deletion	Chr1	22484794	22484885	91
Deletion	Chr11	24779950	24779952	2
Deletion	Chr1	25663789	25663790	1
Deletion	Chr11	26000624	26000625	1
Deletion	Chr8	26865730	26865738	8
Deletion	Chr2	34896447	34896448	1
Deletion	Chr3	35274616	35274618	2

Insertions: 15

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	32969497	32969497	1
Insertion	Chr1	6359355	6359355	1
Insertion	Chr10	7921082	7921082	1
Insertion	Chr11	26085596	26085637	42
Insertion	Chr4	1099684	1099684	1
Insertion	Chr5	20323963	20323968	6
Insertion	Chr6	747275	747275	1
Insertion	Chr8	12655956	12655985	30
Insertion	Chr8	19903555	19903555	1
Insertion	Chr8	22875528	22875528	1
Insertion	Chr8	25999155	25999157	3	LOC_Os08g41160
Insertion	Chr8	6201134	6201134	1
Insertion	Chr8	9375873	9375873	1	LOC_Os08g15410
Insertion	Chr9	21073974	21073974	1	LOC_Os09g36540
Insertion	Chr9	8244079	8244079	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	1549377	1921461	LOC_Os09g03210
Inversion	Chr9	1549388	1921461	LOC_Os09g03210

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	971750	Chr2	23556576	2
Translocation	Chr12	972001	Chr2	23556576	16
Translocation	Chr2	16477110	Chr1	26060858

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