Search Results
| Mutant Information |
|---|
| Mutant Name | FN4452-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4452-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 43
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 5995170 | C-T | HOMO | SYNONYMOUS_CODING | |
| SBS | Chr1 | 9131492 | G-C | HET | NON_SYNONYMOUS_CODING | LOC_Os01g16160 |
| SBS | Chr1 | 13114798 | G-A | HET | INTRON | |
| SBS | Chr1 | 16097119 | C-T | HET | INTERGENIC | |
| SBS | Chr1 | 18907745 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os01g34300 |
| SBS | Chr1 | 20805807 | G-A | HET | UTR_5_PRIME | |
| SBS | Chr1 | 27726787 | G-A | HET | SYNONYMOUS_CODING | |
| SBS | Chr2 | 3205883 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os02g06410 |
| SBS | Chr2 | 12729312 | T-A | HOMO | INTERGENIC | |
| SBS | Chr2 | 13987763 | G-T | HET | INTERGENIC | |
| SBS | Chr2 | 14365697 | C-T | HOMO | INTERGENIC | |
| SBS | Chr3 | 17045334 | T-A | HET | INTERGENIC | |
| SBS | Chr3 | 17629087 | C-T | HET | INTERGENIC | |
| SBS | Chr4 | 13687428 | T-C | HOMO | INTRON | |
| SBS | Chr4 | 14054650 | G-C | HOMO | INTERGENIC | |
| SBS | Chr4 | 15061784 | T-C | HOMO | INTERGENIC | |
| SBS | Chr4 | 28380055 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os04g47830 |
| SBS | Chr5 | 17693077 | C-T | HOMO | INTERGENIC | |
| SBS | Chr6 | 21294406 | A-G | HET | INTERGENIC | |
| SBS | Chr7 | 2906265 | A-G | HET | INTERGENIC | |
| SBS | Chr7 | 15043748 | C-A | HET | INTERGENIC | |
| SBS | Chr7 | 19090798 | G-A | HET | INTERGENIC | |
| SBS | Chr8 | 5779819 | T-G | HET | INTERGENIC | |
| SBS | Chr8 | 16836144 | C-G | HET | INTRON | |
| SBS | Chr8 | 17096321 | A-T | HET | INTERGENIC | |
| SBS | Chr8 | 17682001 | G-A | HET | INTERGENIC | |
| SBS | Chr9 | 4886230 | A-G | HOMO | INTRON | |
| SBS | Chr9 | 9015070 | G-C | HET | INTERGENIC | |
| SBS | Chr9 | 10856353 | C-T | HET | INTERGENIC | |
| SBS | Chr9 | 14873361 | A-T | HET | INTRON | |
| SBS | Chr9 | 22211556 | A-T | HOMO | INTERGENIC | |
| SBS | Chr9 | 22211564 | G-T | HOMO | INTERGENIC | |
| SBS | Chr9 | 22211565 | C-T | HOMO | INTERGENIC | |
| SBS | Chr10 | 21229165 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os10g39730 |
| SBS | Chr11 | 9316026 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os11g16790 |
| SBS | Chr11 | 18639710 | A-G | HET | INTRON | |
| SBS | Chr11 | 24113501 | C-T | HET | INTERGENIC | |
| SBS | Chr12 | 495163 | C-T | HET | UTR_5_PRIME | |
| SBS | Chr12 | 495165 | C-T | HET | UTR_5_PRIME | |
| SBS | Chr12 | 4526008 | C-T | HET | INTERGENIC | |
| SBS | Chr12 | 9255327 | C-A | HET | SYNONYMOUS_CODING | |
| SBS | Chr12 | 14454697 | C-T | HET | INTRON | |
| SBS | Chr12 | 14454698 | A-T | HET | INTRON |
Deletions: 28
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr4 | 169267 | 169269 | 2 | |
| Deletion | Chr12 | 483221 | 483227 | 6 | |
| Deletion | Chr12 | 972001 | 1055000 | 83000 | 17 |
| Deletion | Chr10 | 2038894 | 2038896 | 2 | LOC_Os10g04316 |
| Deletion | Chr10 | 3752062 | 3752099 | 37 | LOC_Os10g07150 |
| Deletion | Chr1 | 3848448 | 3848449 | 1 | |
| Deletion | Chr10 | 4908267 | 4908309 | 42 | |
| Deletion | Chr1 | 5939001 | 6088000 | 149000 | 21 |
| Deletion | Chr11 | 6425327 | 6425328 | 1 | |
| Deletion | Chr6 | 7819881 | 7819882 | 1 | |
| Deletion | Chr9 | 10162636 | 10162637 | 1 | |
| Deletion | Chr4 | 13876680 | 13876681 | 1 | |
| Deletion | Chr12 | 14130368 | 14130374 | 6 | |
| Deletion | Chr12 | 14686558 | 14686559 | 1 | |
| Deletion | Chr11 | 15549534 | 15549543 | 9 | |
| Deletion | Chr12 | 16170399 | 16170400 | 1 | |
| Deletion | Chr9 | 18590322 | 18590323 | 1 | |
| Deletion | Chr11 | 18875118 | 18875119 | 1 | |
| Deletion | Chr5 | 19619183 | 19619192 | 9 | |
| Deletion | Chr12 | 19778013 | 19778078 | 65 | |
| Deletion | Chr9 | 20351507 | 20351508 | 1 | |
| Deletion | Chr1 | 22484794 | 22484885 | 91 | |
| Deletion | Chr11 | 24779950 | 24779952 | 2 | |
| Deletion | Chr1 | 25663789 | 25663790 | 1 | |
| Deletion | Chr11 | 26000624 | 26000625 | 1 | |
| Deletion | Chr8 | 26865730 | 26865738 | 8 | |
| Deletion | Chr2 | 34896447 | 34896448 | 1 | |
| Deletion | Chr3 | 35274616 | 35274618 | 2 |
Insertions: 15
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr6 | 747275 | 747275 | 1 | |
| Insertion | Chr8 | 6201134 | 6201134 | 1 | |
| Insertion | Chr8 | 9375873 | 9375873 | 1 | LOC_Os08g15410 |
| Insertion | Chr8 | 19903555 | 19903555 | 1 | |
| Insertion | Chr8 | 22875528 | 22875528 | 1 | |
| Insertion | Chr9 | 21073974 | 21073974 | 1 | LOC_Os09g36540 |
| Insertion | Chr1 | 6359355 | 6359355 | 1 | |
| Insertion | Chr1 | 32969497 | 32969497 | 1 | |
| Insertion | Chr4 | 1099684 | 1099684 | 1 | |
| Insertion | Chr5 | 20323963 | 20323968 | 6 | |
| Insertion | Chr8 | 12655956 | 12655985 | 30 | |
| Insertion | Chr8 | 25999155 | 25999157 | 3 | LOC_Os08g41160 |
| Insertion | Chr9 | 8244079 | 8244079 | 1 | |
| Insertion | Chr10 | 7921082 | 7921082 | 1 | |
| Insertion | Chr11 | 26085596 | 26085637 | 42 |
Inversions: 2
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr9 | 1549377 | 1921461 | LOC_Os09g03210 |
| Inversion | Chr9 | 1549388 | 1921461 | LOC_Os09g03210 |
Translocations: 3
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr12 | 971750 | Chr2 | 23556576 | 2 |
| Translocation | Chr12 | 972001 | Chr2 | 23556576 | 16 |
| Translocation | Chr2 | 16477110 | Chr1 | 26060858 |