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Mutant Information

Variant Information

Single base substitutions: 28

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	26521878	C-T	HOMO	INTERGENIC
SBS	Chr1	39827462	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g68560
SBS	Chr1	39827469	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g68560
SBS	Chr1	40576115	C-A	HET	INTERGENIC
SBS	Chr10	12972495	C-A	HET	SYNONYMOUS_CODING
SBS	Chr10	12972501	C-T	HET	SYNONYMOUS_CODING
SBS	Chr10	7141857	C-T	HET	INTERGENIC
SBS	Chr10	7977296	G-T	HET	INTERGENIC
SBS	Chr12	3751589	C-T	HET	INTERGENIC
SBS	Chr2	7827967	G-C	HET	INTERGENIC
SBS	Chr3	19575665	C-A	HET	INTERGENIC
SBS	Chr3	19643953	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g35430
SBS	Chr3	29247692	T-C	HET	INTERGENIC
SBS	Chr3	8177143	T-C	HET	INTERGENIC
SBS	Chr4	20833084	C-A	HOMO	INTERGENIC
SBS	Chr4	3039008	C-G	HOMO	INTERGENIC
SBS	Chr4	8767479	A-G	HOMO	INTERGENIC
SBS	Chr5	10742132	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os05g18550
SBS	Chr6	13018807	A-G	HET	INTERGENIC
SBS	Chr6	24803749	G-A	HOMO	INTERGENIC
SBS	Chr6	27607057	A-C	HOMO	INTERGENIC
SBS	Chr6	41756	C-T	HET	INTRON
SBS	Chr7	11813127	T-C	HET	SYNONYMOUS_CODING
SBS	Chr7	16490501	G-A	HET	INTERGENIC
SBS	Chr7	20738785	G-T	HET	INTERGENIC
SBS	Chr7	20738786	C-T	HET	INTERGENIC
SBS	Chr8	16002905	C-G	HOMO	SPLICE_SITE_REGION
SBS	Chr9	2711574	G-A	HET	SYNONYMOUS_CODING

Deletions: 34

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	898081	898085	4
Deletion	Chr2	2182909	2182910	1
Deletion	Chr4	3219442	3219443	1
Deletion	Chr9	3285419	3285420	1
Deletion	Chr10	4561001	4615000	54000	11
Deletion	Chr10	4617001	4680000	63000	10
Deletion	Chr8	5047933	5047934	1
Deletion	Chr5	5115132	5115136	4	LOC_Os05g09150
Deletion	Chr11	5919862	5919863	1
Deletion	Chr1	6194258	6194264	6
Deletion	Chr4	8633003	8633020	17
Deletion	Chr10	9383001	9684000	301000	52
Deletion	Chr10	9461772	9461775	3
Deletion	Chr10	9685001	9732000	47000	9
Deletion	Chr10	10055001	10137000	82000	12
Deletion	Chr10	10143001	10189000	46000	8
Deletion	Chr6	10866350	10866352	2
Deletion	Chr10	10921001	11150000	229000	30
Deletion	Chr10	11152001	11438000	286000	41
Deletion	Chr1	11184568	11184574	6	LOC_Os01g19720
Deletion	Chr6	12386172	12386173	1	LOC_Os06g21430
Deletion	Chr10	12388001	12439000	51000	10
Deletion	Chr10	12446001	12643000	197000	32
Deletion	Chr10	12644001	12675000	31000	4
Deletion	Chr3	14093942	14093945	3
Deletion	Chr2	15862961	15862962	1
Deletion	Chr8	17106714	17106722	8	LOC_Os08g28060
Deletion	Chr12	17432328	17432329	1	LOC_Os12g29360
Deletion	Chr8	20272017	20272029	12
Deletion	Chr3	26058351	26058352	1
Deletion	Chr3	26762712	26762713	1
Deletion	Chr3	31329468	31329469	1
Deletion	Chr2	34476606	34476607	1
Deletion	Chr1	38616288	38616304	16

Insertions: 21

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	13438947	13438947	1
Insertion	Chr1	664612	664612	1
Insertion	Chr10	12628296	12628296	1	LOC_Os10g24610
Insertion	Chr10	6963763	6963765	3
Insertion	Chr11	1200977	1201003	27
Insertion	Chr12	14859883	14859883	1
Insertion	Chr2	26909876	26909877	2
Insertion	Chr2	31370667	31370667	1
Insertion	Chr3	20863896	20863896	1
Insertion	Chr3	34131742	34131742	1
Insertion	Chr4	2332596	2332596	1
Insertion	Chr4	2641367	2641368	2
Insertion	Chr4	4021831	4021831	1
Insertion	Chr5	17684059	17684059	1
Insertion	Chr5	4276329	4276329	1
Insertion	Chr6	18795365	18795366	2
Insertion	Chr6	7656560	7656567	8
Insertion	Chr7	9894037	9894040	4
Insertion	Chr9	13258549	13258549	1
Insertion	Chr9	15651874	15651912	39
Insertion	Chr9	7013095	7013095	1

No Inversion

No Translocation

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