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Mutant Information

Variant Information

Single base substitutions: 31

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	29447387	C-A	HET	INTERGENIC
SBS	Chr1	36647072	T-A	HOMO	UTR_3_PRIME
SBS	Chr1	36814668	G-A	HOMO	STOP_GAINED	LOC_Os01g63510
SBS	Chr1	3951796	G-C	HET	INTERGENIC
SBS	Chr1	6966451	A-G	HOMO	INTERGENIC
SBS	Chr10	2823002	G-A	HET	INTERGENIC
SBS	Chr11	15228774	T-A	HOMO	INTERGENIC
SBS	Chr11	16889993	T-A	HET	INTERGENIC
SBS	Chr12	13971659	C-A	HOMO	INTERGENIC
SBS	Chr12	15895306	T-A	HET	INTRON
SBS	Chr2	2412977	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os02g05070
SBS	Chr2	30967318	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g50690
SBS	Chr3	28322572	C-T	HET	INTERGENIC
SBS	Chr4	33106154	G-A	HET	INTERGENIC
SBS	Chr4	33505542	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g56180
SBS	Chr4	6738919	G-T	HET	INTERGENIC
SBS	Chr5	11142581	A-T	HET	INTERGENIC
SBS	Chr5	12233203	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g20830
SBS	Chr5	22946069	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g39130
SBS	Chr5	24369063	A-T	HOMO	INTERGENIC
SBS	Chr5	5501971	G-T	HOMO	INTERGENIC
SBS	Chr5	8681467	T-G	HOMO	INTRON
SBS	Chr6	16806982	T-A	HET	INTERGENIC
SBS	Chr6	17735179	T-C	HET	INTERGENIC
SBS	Chr7	12999772	T-C	HOMO	INTERGENIC
SBS	Chr7	7072441	G-T	HOMO	INTERGENIC
SBS	Chr8	20012698	A-G	HET	INTERGENIC
SBS	Chr8	21162630	C-T	HOMO	INTERGENIC
SBS	Chr8	6583772	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g11200
SBS	Chr9	17259658	A-C	HET	INTERGENIC
SBS	Chr9	4011295	C-T	HET	SYNONYMOUS_CODING

Deletions: 27

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	2590316	2590368	52
Deletion	Chr3	2894085	2894086	1
Deletion	Chr9	2960389	2960402	13
Deletion	Chr7	5301251	5301270	19
Deletion	Chr9	5467019	5467021	2	LOC_Os09g10030
Deletion	Chr5	6652053	6652074	21
Deletion	Chr12	7880516	7880520	4
Deletion	Chr2	10836649	10836672	23
Deletion	Chr6	11602191	11602192	1
Deletion	Chr1	12393472	12393474	2
Deletion	Chr6	12630193	12630195	2
Deletion	Chr5	13600945	13600950	5	LOC_Os05g23690
Deletion	Chr12	14496656	14496664	8
Deletion	Chr12	14500838	14500855	17
Deletion	Chr7	14859982	14859983	1
Deletion	Chr5	14891538	14891540	2	LOC_Os05g25610
Deletion	Chr6	16060183	16060184	1
Deletion	Chr3	16956371	16956450	79
Deletion	Chr4	17087001	17142000	55000	7
Deletion	Chr4	17144001	17227000	83000	13
Deletion	Chr4	17229001	17288000	59000	8
Deletion	Chr8	17547455	17547457	2
Deletion	Chr12	20045598	20045599	1
Deletion	Chr6	20100717	20100718	1
Deletion	Chr6	20214046	20214047	1
Deletion	Chr5	28281991	28281992	1
Deletion	Chr1	38686102	38686105	3

Insertions: 11

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr10	4421071	4421071	1
Insertion	Chr11	3199331	3199351	21
Insertion	Chr12	17120397	17120397	1	LOC_Os12g28950
Insertion	Chr12	24987481	24987482	2
Insertion	Chr2	18678215	18678215	1
Insertion	Chr3	24922254	24922254	1
Insertion	Chr3	28811433	28811433	1
Insertion	Chr3	5954851	5954853	3
Insertion	Chr4	12756713	12756713	1
Insertion	Chr5	27829995	27829996	2
Insertion	Chr8	810433	810433	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	8412491	8412592

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	5127070	Chr3	13468749	LOC_Os10g09500
Translocation	Chr11	18669904	Chr9	2308794
Translocation	Chr7	25290578	Chr6	30259663

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