Search Results
| Mutant Information |
|---|
| Mutant Name | FN4458-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4458-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 46
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 7089618 | T-A | HOMO | INTERGENIC | |
| SBS | Chr1 | 7089619 | C-A | HOMO | INTERGENIC | |
| SBS | Chr1 | 25178733 | C-T | HET | INTERGENIC | |
| SBS | Chr1 | 33649821 | C-T | HET | INTRON | |
| SBS | Chr2 | 6175181 | A-G | HET | INTERGENIC | |
| SBS | Chr2 | 6175182 | T-C | HET | INTERGENIC | |
| SBS | Chr2 | 9801808 | G-A | HET | INTERGENIC | |
| SBS | Chr2 | 30931331 | C-G | HET | NON_SYNONYMOUS_CODING | LOC_Os02g50640 |
| SBS | Chr2 | 32591081 | C-G | HET | INTRON | |
| SBS | Chr3 | 6517809 | A-G | HOMO | SYNONYMOUS_CODING | |
| SBS | Chr3 | 15697843 | A-T | HOMO | INTERGENIC | |
| SBS | Chr3 | 15697844 | G-T | HOMO | INTERGENIC | |
| SBS | Chr3 | 18956897 | C-T | HOMO | INTERGENIC | |
| SBS | Chr4 | 8944035 | T-A | HET | INTERGENIC | |
| SBS | Chr4 | 15379919 | A-G | HOMO | INTERGENIC | |
| SBS | Chr4 | 16844233 | G-A | HOMO | UTR_3_PRIME | |
| SBS | Chr4 | 17063209 | C-T | HOMO | INTERGENIC | |
| SBS | Chr4 | 21580661 | C-A | HET | INTRON | |
| SBS | Chr4 | 35277878 | G-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os04g59330 |
| SBS | Chr4 | 35277881 | C-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os04g59330 |
| SBS | Chr4 | 35433033 | C-T | HET | INTERGENIC | |
| SBS | Chr5 | 1529237 | C-A | HET | NON_SYNONYMOUS_CODING | LOC_Os05g03600 |
| SBS | Chr5 | 12902796 | G-C | HET | INTRON | |
| SBS | Chr5 | 20441147 | G-A | HET | UTR_3_PRIME | |
| SBS | Chr5 | 20441150 | A-G | HET | UTR_3_PRIME | |
| SBS | Chr6 | 19807622 | C-T | HET | NON_SYNONYMOUS_CODING | LOC_Os06g34010 |
| SBS | Chr6 | 21752820 | A-G | HOMO | INTERGENIC | |
| SBS | Chr6 | 23038861 | C-T | HET | INTERGENIC | |
| SBS | Chr6 | 26229015 | C-A | HET | INTERGENIC | |
| SBS | Chr7 | 5547235 | C-T | HET | INTERGENIC | |
| SBS | Chr7 | 10600816 | A-C | HET | INTERGENIC | |
| SBS | Chr7 | 11694830 | T-C | HET | INTRON | |
| SBS | Chr7 | 29226666 | A-T | HET | STOP_GAINED | LOC_Os07g48840 |
| SBS | Chr8 | 18499504 | C-T | HET | INTERGENIC | |
| SBS | Chr8 | 19170691 | G-A | HET | INTERGENIC | |
| SBS | Chr8 | 22797040 | G-A | HET | INTERGENIC | |
| SBS | Chr8 | 25428071 | G-A | HET | INTRON | |
| SBS | Chr8 | 27975396 | G-A | HOMO | INTERGENIC | |
| SBS | Chr8 | 27975400 | C-A | HOMO | INTERGENIC | |
| SBS | Chr9 | 500475 | C-T | HET | INTERGENIC | |
| SBS | Chr9 | 4123307 | C-A | HET | INTERGENIC | |
| SBS | Chr10 | 14124072 | C-T | HET | INTERGENIC | |
| SBS | Chr11 | 14502225 | T-C | HOMO | INTERGENIC | |
| SBS | Chr11 | 23144446 | G-T | HOMO | INTERGENIC | |
| SBS | Chr12 | 8922609 | G-A | HET | SYNONYMOUS_CODING | |
| SBS | Chr12 | 14527510 | A-G | HET | INTERGENIC |
Deletions: 25
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr3 | 1517880 | 1517881 | 1 | |
| Deletion | Chr3 | 4267847 | 4267848 | 1 | |
| Deletion | Chr12 | 6901524 | 6901525 | 1 | |
| Deletion | Chr11 | 7920578 | 7920624 | 46 | |
| Deletion | Chr10 | 8140190 | 8140212 | 22 | |
| Deletion | Chr2 | 8443891 | 8443892 | 1 | |
| Deletion | Chr1 | 8498877 | 8498881 | 4 | |
| Deletion | Chr8 | 9807985 | 9807986 | 1 | LOC_Os08g16080 |
| Deletion | Chr12 | 11407241 | 11407259 | 18 | |
| Deletion | Chr12 | 14527395 | 14527396 | 1 | |
| Deletion | Chr12 | 15152660 | 15152661 | 1 | |
| Deletion | Chr3 | 15690953 | 15690959 | 6 | |
| Deletion | Chr2 | 15916601 | 15916615 | 14 | |
| Deletion | Chr4 | 20584837 | 20584839 | 2 | |
| Deletion | Chr2 | 20743416 | 20743417 | 1 | |
| Deletion | Chr3 | 22493708 | 22493709 | 1 | |
| Deletion | Chr12 | 24547203 | 24547204 | 1 | |
| Deletion | Chr1 | 24865933 | 24865934 | 1 | |
| Deletion | Chr11 | 25044051 | 25044053 | 2 | |
| Deletion | Chr6 | 25639660 | 25639661 | 1 | |
| Deletion | Chr5 | 26189828 | 26189833 | 5 | LOC_Os05g45070 |
| Deletion | Chr8 | 28381391 | 28381398 | 7 | LOC_Os08g45200 |
| Deletion | Chr4 | 30673104 | 30673106 | 2 | |
| Deletion | Chr1 | 31880132 | 31880133 | 1 | |
| Deletion | Chr1 | 42849270 | 42849271 | 1 |
Insertions: 12
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr4 | 34768945 | 34768945 | 1 | |
| Insertion | Chr7 | 21649419 | 21649420 | 2 | |
| Insertion | Chr1 | 3801991 | 3801992 | 2 | |
| Insertion | Chr2 | 13709743 | 13709743 | 1 | LOC_Os02g23820 |
| Insertion | Chr2 | 15353699 | 15353699 | 1 | |
| Insertion | Chr4 | 13881698 | 13881736 | 39 | |
| Insertion | Chr6 | 29300028 | 29300058 | 31 | |
| Insertion | Chr8 | 9267160 | 9267160 | 1 | |
| Insertion | Chr8 | 14808457 | 14808457 | 1 | LOC_Os08g24520 |
| Insertion | Chr8 | 17459718 | 17459757 | 40 | |
| Insertion | Chr9 | 1611363 | 1611365 | 3 | |
| Insertion | Chr12 | 16301518 | 16301548 | 31 |
Inversions: 3
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr3 | 13029648 | 13043128 | |
| Inversion | Chr3 | 13029651 | 13043135 | |
| Inversion | Chr1 | 14784241 | 14784360 |
Translocations: 3
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr5 | 20200680 | Chr1 | 35515657 | |
| Translocation | Chr5 | 20201349 | Chr1 | 35515658 | |
| Translocation | Chr3 | 22942600 | Chr1 | 8783442 |