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Mutant Information

Variant Information

Single base substitutions: 23

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13165220	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os01g23430
SBS	Chr1	5127823	C-T	HET	INTERGENIC
SBS	Chr10	1754092	G-T	HET	INTERGENIC
SBS	Chr11	22367966	A-T	HOMO	INTRON
SBS	Chr11	3105050	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os11g06430
SBS	Chr2	27069883	C-T	HET	INTERGENIC
SBS	Chr2	8103945	C-T	HET	INTERGENIC
SBS	Chr3	29161527	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os03g51020
SBS	Chr4	14729400	C-A	HET	INTERGENIC
SBS	Chr4	15946864	A-G	HET	INTRON
SBS	Chr5	7679523	G-A	HET	INTERGENIC
SBS	Chr6	15072886	T-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g25800
SBS	Chr6	26794037	C-G	HOMO	INTERGENIC
SBS	Chr6	28304037	G-A	HET	INTERGENIC
SBS	Chr6	8986507	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g15830
SBS	Chr7	10998226	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os07g18610
SBS	Chr7	25312896	G-T	HET	INTERGENIC
SBS	Chr7	25312897	A-T	HET	INTERGENIC
SBS	Chr7	8538215	G-A	HET	INTRON
SBS	Chr7	9933149	T-C	HET	INTERGENIC
SBS	Chr8	25536297	C-T	HET	INTERGENIC
SBS	Chr8	6730370	C-T	HET	UTR_5_PRIME
SBS	Chr9	16833666	T-C	HET	INTRON

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr3	1618691	1618697	6
Deletion	Chr6	2931693	2931695	2	LOC_Os06g06310
Deletion	Chr5	3237930	3237943	13
Deletion	Chr11	3699987	3699994	7
Deletion	Chr5	3876342	3876344	2
Deletion	Chr7	7268603	7268607	4
Deletion	Chr7	7310220	7310224	4	LOC_Os07g12770
Deletion	Chr7	8701346	8701347	1
Deletion	Chr9	11808964	11808967	3	LOC_Os09g19734
Deletion	Chr3	13628244	13628245	1
Deletion	Chr6	16414904	16414945	41
Deletion	Chr6	19850148	19850154	6
Deletion	Chr5	22067469	22067470	1
Deletion	Chr1	23576548	23576557	9
Deletion	Chr1	23921828	23921863	35
Deletion	Chr4	26751205	26751209	4
Deletion	Chr4	28942980	28942981	1
Deletion	Chr6	29010711	29010712	1
Deletion	Chr1	41660521	41660526	5	LOC_Os01g71900

Insertions: 6

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	19646620	19646620	1
Insertion	Chr11	25763332	25763335	4
Insertion	Chr2	16513963	16513964	2
Insertion	Chr2	25586548	25586549	2
Insertion	Chr7	24934517	24934519	3	LOC_Os07g41600
Insertion	Chr9	15024747	15024764	18

No Inversion

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	6527455	Chr4	1144115
Translocation	Chr11	25909062	Chr8	9999509

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