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Mutant Information

Mutant Name	FN4464-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4464-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 48

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15885269	T-C	HET	INTRON
SBS	Chr1	2703580	A-G	HET	INTRON
SBS	Chr1	28838412	A-T	HOMO	INTERGENIC
SBS	Chr1	35179297	T-C	HET	UTR_5_PRIME
SBS	Chr1	39757200	C-T	HET	INTERGENIC
SBS	Chr1	9230724	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g16290
SBS	Chr11	15624942	T-C	HET	INTRON
SBS	Chr11	15624946	G-A	HET	INTRON
SBS	Chr11	2162385	G-A	HET	INTERGENIC
SBS	Chr11	22072229	T-C	HET	INTERGENIC
SBS	Chr11	26064770	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g43210
SBS	Chr11	26064771	G-A	HET	SYNONYMOUS_CODING
SBS	Chr12	11094392	T-A	HOMO	INTERGENIC
SBS	Chr12	13168326	T-C	HOMO	INTERGENIC
SBS	Chr12	14308027	T-G	HOMO	INTERGENIC
SBS	Chr12	8220535	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os12g14420
SBS	Chr2	12290743	T-G	HOMO	INTERGENIC
SBS	Chr2	17634568	C-T	HET	INTERGENIC
SBS	Chr2	30849232	C-G	HET	INTRON
SBS	Chr2	31080549	A-G	HET	SYNONYMOUS_CODING
SBS	Chr2	6542914	C-A	HET	INTRON
SBS	Chr3	12965937	C-T	HET	SYNONYMOUS_CODING
SBS	Chr3	14582834	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g25540
SBS	Chr3	2922841	A-C	HET	UTR_3_PRIME
SBS	Chr3	29525945	C-A	HET	INTERGENIC
SBS	Chr3	9844722	T-A	HET	INTRON
SBS	Chr4	10244501	C-A	HET	INTERGENIC
SBS	Chr4	19718114	T-C	HET	INTERGENIC
SBS	Chr4	30397086	C-G	HET	UTR_3_PRIME
SBS	Chr5	11800535	A-C	HET	SYNONYMOUS_CODING
SBS	Chr5	26751655	C-A	HET	INTERGENIC
SBS	Chr5	8022354	G-A	HET	INTERGENIC
SBS	Chr6	12318935	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g21330
SBS	Chr6	19956643	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g34300
SBS	Chr6	28303600	A-G	HET	INTERGENIC
SBS	Chr6	6181480	G-A	HOMO	UTR_5_PRIME
SBS	Chr6	8638924	T-C	HET	INTERGENIC
SBS	Chr6	8829610	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g15570
SBS	Chr6	9050742	G-A	HET	INTERGENIC
SBS	Chr6	9050771	G-A	HET	INTERGENIC
SBS	Chr6	9050774	G-A	HET	INTERGENIC
SBS	Chr7	15681395	G-A	HET	INTERGENIC
SBS	Chr7	18984209	A-T	HOMO	INTERGENIC
SBS	Chr8	2186787	A-C	HET	INTERGENIC
SBS	Chr8	5797888	T-A	HET	INTERGENIC
SBS	Chr8	6093481	C-T	HET	INTERGENIC
SBS	Chr9	16893125	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os09g27760
SBS	Chr9	697163	C-T	HOMO	INTRON

Deletions: 26

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	311478	311489	11
Deletion	Chr7	1165892	1165898	6
Deletion	Chr9	1938415	1938466	51
Deletion	Chr4	2766996	2767059	63
Deletion	Chr12	4126421	4126423	2
Deletion	Chr9	5464973	5464974	1	LOC_Os09g10030
Deletion	Chr12	6070533	6070534	1
Deletion	Chr9	8132215	8132217	2
Deletion	Chr8	8327349	8327350	1
Deletion	Chr2	8545651	8545652	1
Deletion	Chr6	8579902	8579903	1
Deletion	Chr11	9716966	9716967	1	LOC_Os11g17430
Deletion	Chr5	9760988	9760990	2
Deletion	Chr1	9993587	9993588	1
Deletion	Chr1	10772824	10772828	4
Deletion	Chr12	11919947	11919957	10
Deletion	Chr4	13412658	13412663	5
Deletion	Chr9	14215712	14215713	1
Deletion	Chr10	14451755	14451756	1
Deletion	Chr12	17524861	17524863	2
Deletion	Chr9	20766578	20766579	1
Deletion	Chr10	21496209	21496210	1	LOC_Os10g40150
Deletion	Chr8	23189608	23189609	1
Deletion	Chr4	29870570	29870572	2
Deletion	Chr5	29955720	29955721	1
Deletion	Chr1	37081565	37081566	1

Insertions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	8325063	8325063	1
Insertion	Chr10	19776481	19776481	1
Insertion	Chr11	347123	347123	1
Insertion	Chr2	15998946	15998946	1
Insertion	Chr2	948291	948291	1
Insertion	Chr2	9555651	9555656	6	LOC_Os02g16740
Insertion	Chr3	3950953	3950953	1
Insertion	Chr4	14218688	14218693	6
Insertion	Chr4	21127348	21127349	2
Insertion	Chr5	23249049	23249049	1
Insertion	Chr5	2698400	2698400	1
Insertion	Chr7	15281672	15281672	1
Insertion	Chr7	23461536	23461536	1
Insertion	Chr7	4450627	4450627	1
Insertion	Chr7	6360097	6360131	35
Insertion	Chr8	18856274	18856274	1
Insertion	Chr8	3704846	3704847	2
Insertion	Chr9	15658671	15658671	1
Insertion	Chr9	5365238	5365238	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	16209307	16294994

Translocations: 8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	6045067	Chr3	32293355
Translocation	Chr12	11098438	Chr10	15600768
Translocation	Chr12	11098500	Chr1	14758994	LOC_Os01g19580
Translocation	Chr12	11099690	Chr10	15600767
Translocation	Chr12	11099694	Chr10	15601283
Translocation	Chr10	15600283	Chr1	14758991	LOC_Os01g27910
Translocation	Chr4	19121525	Chr3	32292359
Translocation	Chr6	25956566	Chr3	32274782

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