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Mutant Information

Variant Information

Single base substitutions: 38

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13013520	C-G	HET	INTERGENIC
SBS	Chr1	23705337	T-C	HET	INTERGENIC
SBS	Chr1	28804874	A-T	HET	INTERGENIC
SBS	Chr10	14704117	C-A	HOMO	INTERGENIC
SBS	Chr10	17000809	T-C	HET	INTERGENIC
SBS	Chr10	1773349	T-G	HET	INTERGENIC
SBS	Chr10	18118254	A-C	HOMO	INTERGENIC
SBS	Chr10	18513054	T-G	HOMO	INTERGENIC
SBS	Chr10	20242493	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os10g37820
SBS	Chr10	20242494	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os10g37820
SBS	Chr10	8351801	T-C	HET	INTERGENIC
SBS	Chr11	1570331	T-C	HET	INTERGENIC
SBS	Chr11	18026136	A-G	HET	SYNONYMOUS_CODING
SBS	Chr11	3839290	A-G	HET	INTERGENIC
SBS	Chr12	15076212	C-A	HET	INTERGENIC
SBS	Chr12	18029678	G-A	HOMO	INTERGENIC
SBS	Chr2	13995289	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g24150
SBS	Chr2	26638471	C-T	HET	INTERGENIC
SBS	Chr2	27710032	C-G	HET	INTRON
SBS	Chr2	6432302	C-T	HET	INTERGENIC
SBS	Chr3	14705017	C-T	HET	INTERGENIC
SBS	Chr3	32810389	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os03g57540
SBS	Chr4	10694626	C-T	HET	INTERGENIC
SBS	Chr4	14439811	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g25040
SBS	Chr4	23942283	G-A	HOMO	INTERGENIC
SBS	Chr4	2789748	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g05520
SBS	Chr4	5376407	C-G	HET	INTERGENIC
SBS	Chr5	21049519	A-G	HET	INTERGENIC
SBS	Chr5	8278052	T-C	HET	INTERGENIC
SBS	Chr6	5997656	A-C	HOMO	INTERGENIC
SBS	Chr7	14309500	C-T	HET	INTERGENIC
SBS	Chr7	26174917	G-T	HET	INTERGENIC
SBS	Chr7	7876656	C-T	HET	INTERGENIC
SBS	Chr8	20917881	C-T	HET	INTRON
SBS	Chr8	3278955	T-A	HOMO	INTERGENIC
SBS	Chr8	8049933	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g13540
SBS	Chr9	13672750	C-T	HET	INTERGENIC
SBS	Chr9	3575393	A-T	HOMO	INTERGENIC

Deletions: 21

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	64012	64049	37
Deletion	Chr3	1503129	1503130	1
Deletion	Chr1	2367840	2367852	12	LOC_Os01g05030
Deletion	Chr2	5688233	5688239	6
Deletion	Chr8	7445002	7445003	1
Deletion	Chr10	13117777	13117779	2
Deletion	Chr3	13431058	13431063	5
Deletion	Chr10	14560001	14813000	253000	41
Deletion	Chr2	14785311	14785312	1
Deletion	Chr10	14816001	14830000	14000	3
Deletion	Chr10	14833001	14915000	82000	11
Deletion	Chr7	16270766	16270767	1
Deletion	Chr5	17266396	17266397	1
Deletion	Chr8	19102461	19102466	5
Deletion	Chr1	19410311	19410312	1
Deletion	Chr4	20277370	20277374	4
Deletion	Chr5	21495805	21495813	8
Deletion	Chr6	23352365	23352457	92
Deletion	Chr8	24278937	24278938	1
Deletion	Chr4	34611416	34611418	2
Deletion	Chr1	38233800	38233801	1

Insertions: 10

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	25323770	25323770	1
Insertion	Chr11	3903761	3903761	1
Insertion	Chr2	6330548	6330548	1
Insertion	Chr4	1757511	1757511	1
Insertion	Chr4	2631922	2631922	1
Insertion	Chr5	20634220	20634221	2
Insertion	Chr6	23209053	23209053	1
Insertion	Chr8	9811693	9811693	1	LOC_Os08g16090
Insertion	Chr9	5650374	5650374	1
Insertion	Chr9	6881537	6881575	39

Inversions: 7

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	7483417	7815472
Inversion	Chr6	7787165	7815467
Inversion	Chr5	17337838	17337935
Inversion	Chr3	18746712	18750977	LOC_Os03g32749
Inversion	Chr3	18747106	18750984	LOC_Os03g32749
Inversion	Chr5	19301410	19510298
Inversion	Chr5	19301505	19510308

Translocations: 7

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	9411202	Chr3	6132877	LOC_Os10g18550
Translocation	Chr10	9411736	Chr3	6132903	LOC_Os03g16920
Translocation	Chr10	14482818	Chr9	22293139
Translocation	Chr10	14485882	Chr9	22293136
Translocation	Chr3	23790872	Chr1	35655917	LOC_Os03g42730
Translocation	Chr3	23791474	Chr1	35655917
Translocation	Chr7	25633898	Chr5	22590045	LOC_Os07g42790

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