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Mutant Information

Variant Information

Single base substitutions: 22

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15782570	A-G	HET	INTRON
SBS	Chr1	35867517	G-A	HET	INTERGENIC
SBS	Chr2	9028051	C-T	HET	INTERGENIC
SBS	Chr2	9028052	A-T	HET	INTERGENIC
SBS	Chr2	18608849	C-T	HET	SYNONYMOUS_CODING
SBS	Chr3	20165124	T-C	HET	INTERGENIC
SBS	Chr3	20430644	A-G	HET	INTERGENIC
SBS	Chr3	20997395	T-A	HET	INTERGENIC
SBS	Chr3	29543899	A-T	HET	UTR_3_PRIME
SBS	Chr4	2833113	G-A	HET	INTERGENIC
SBS	Chr6	24119377	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g40480
SBS	Chr7	14678664	C-G	HET	INTERGENIC
SBS	Chr7	15903873	T-A	HET	INTERGENIC
SBS	Chr8	9579041	A-G	HOMO	INTERGENIC
SBS	Chr9	14320279	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g24090
SBS	Chr10	8605251	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr10	16283245	T-A	HOMO	INTERGENIC
SBS	Chr11	1630015	T-G	HET	INTRON
SBS	Chr11	3054548	G-A	HET	INTERGENIC
SBS	Chr11	3054550	G-T	HET	INTERGENIC
SBS	Chr11	22145479	C-T	HOMO	INTERGENIC
SBS	Chr12	7374343	C-A	HET	INTERGENIC

Deletions: 26

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	1463122	1463123	1	LOC_Os07g03630
Deletion	Chr11	1719488	1719489	1
Deletion	Chr9	2773170	2773172	2
Deletion	Chr10	4112770	4112771	1
Deletion	Chr9	4336918	4336919	1
Deletion	Chr5	6824248	6824249	1
Deletion	Chr1	6917845	6917848	3
Deletion	Chr3	8758305	8758306	1
Deletion	Chr6	9297249	9297252	3	LOC_Os06g16310
Deletion	Chr6	9297674	9297675	1
Deletion	Chr4	11149986	11149994	8
Deletion	Chr1	11375521	11375522	1
Deletion	Chr5	12606746	12606747	1
Deletion	Chr3	13503100	13503105	5
Deletion	Chr4	14599666	14599667	1
Deletion	Chr5	15040643	15040644	1
Deletion	Chr3	15588802	15588811	9
Deletion	Chr11	20227323	20228175	852
Deletion	Chr5	20876020	20876021	1
Deletion	Chr11	21379051	21379052	1
Deletion	Chr12	21679006	21679008	2
Deletion	Chr3	23861001	23903000	42000	6
Deletion	Chr8	25737633	25737636	3
Deletion	Chr5	26001038	26001039	1
Deletion	Chr2	30308253	30308351	98
Deletion	Chr1	32220399	32220401	2

Insertions: 22

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	37248349	37248349	1
Insertion	Chr6	22663803	22663805	3
Insertion	Chr9	9790256	9790256	1
Insertion	Chr11	893100	893100	1
Insertion	Chr1	15216528	15216528	1
Insertion	Chr2	5699278	5699289	12
Insertion	Chr2	9181035	9181035	1
Insertion	Chr2	33915359	33915359	1
Insertion	Chr4	1934499	1934500	2
Insertion	Chr4	12153925	12153925	1
Insertion	Chr5	15682421	15682422	2
Insertion	Chr6	14847697	14847715	19
Insertion	Chr6	17140224	17140224	1
Insertion	Chr6	30712449	30712449	1
Insertion	Chr7	174987	174987	1
Insertion	Chr7	1308316	1308321	6
Insertion	Chr7	8861017	8861017	1
Insertion	Chr8	7130239	7130239	1
Insertion	Chr8	7240043	7240043	1
Insertion	Chr8	13781236	13781237	2
Insertion	Chr8	17053224	17053224	1
Insertion	Chr12	21372307	21372309	3

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	4994628	4994885	LOC_Os09g09330
Inversion	Chr5	11923904	11992962	LOC_Os05g20330
Inversion	Chr3	24441604	24441744
Inversion	Chr3	31173868	31198219
Inversion	Chr4	34239369	34239588

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	11700401	Chr2	12930604
Translocation	Chr7	11701484	Chr2	12930593

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