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Mutant Information

Mutant Name	FN4472-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4472-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 47

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	17815279	C-T	HET	INTERGENIC
SBS	Chr1	22097287	C-T	HET	INTERGENIC
SBS	Chr1	29709579	G-C	HOMO	INTERGENIC
SBS	Chr1	31783462	C-A	HET	INTERGENIC
SBS	Chr1	41009375	C-T	HET	INTERGENIC
SBS	Chr10	11423652	G-A	HET	INTERGENIC
SBS	Chr10	22550599	G-A	HET	INTERGENIC
SBS	Chr10	6988540	G-A	HOMO	INTERGENIC
SBS	Chr10	7931150	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os10g15130
SBS	Chr11	23008903	T-C	HET	INTERGENIC
SBS	Chr11	24175229	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os11g40510
SBS	Chr11	27656460	T-C	HET	UTR_3_PRIME
SBS	Chr12	12745272	C-T	HET	INTRON
SBS	Chr12	1871710	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g04410
SBS	Chr12	3581072	G-T	HET	INTRON
SBS	Chr12	4843462	A-G	HET	INTERGENIC
SBS	Chr12	9058894	G-A	HET	INTERGENIC
SBS	Chr2	32243373	T-A	HET	INTRON
SBS	Chr2	32243374	G-T	HET	INTRON
SBS	Chr3	10321299	G-A	HET	INTRON
SBS	Chr3	11205632	C-T	HOMO	INTERGENIC
SBS	Chr3	18928489	C-A	HET	INTRON
SBS	Chr3	24609533	C-T	HET	INTRON
SBS	Chr3	28703907	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g50325
SBS	Chr3	28703910	T-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g50325
SBS	Chr4	28057739	A-G	HET	INTERGENIC
SBS	Chr4	29780756	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g49930
SBS	Chr4	29780757	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g49930
SBS	Chr4	29780761	A-T	HOMO	SPLICE_SITE_REGION
SBS	Chr4	41902	C-T	HET	INTERGENIC
SBS	Chr4	8180834	T-C	HET	SYNONYMOUS_CODING
SBS	Chr5	10614775	C-T	HET	INTERGENIC
SBS	Chr5	22006608	A-C	HET	INTRON
SBS	Chr5	27089897	T-A	HET	INTERGENIC
SBS	Chr5	9495344	A-G	HET	INTERGENIC
SBS	Chr6	16450256	G-T	HET	INTRON
SBS	Chr6	19939984	G-A	HET	INTRON
SBS	Chr6	4608992	C-T	HET	INTERGENIC
SBS	Chr6	964279	G-T	HET	INTERGENIC
SBS	Chr7	24288805	C-T	HET	INTERGENIC
SBS	Chr8	11597017	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os08g19390
SBS	Chr8	17326010	T-C	HOMO	INTERGENIC
SBS	Chr8	22158385	A-G	HET	INTERGENIC
SBS	Chr8	2219410	T-C	HET	INTRON
SBS	Chr8	27385275	G-A	HET	INTRON
SBS	Chr8	27748622	G-A	HET	INTERGENIC
SBS	Chr9	6699477	C-T	HET	INTERGENIC

Deletions: 32

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	132738	132739	1
Deletion	Chr2	193182	193183	1
Deletion	Chr3	2024012	2024016	4
Deletion	Chr4	2073606	2073614	8	LOC_Os04g04390
Deletion	Chr7	2788812	2788814	2
Deletion	Chr8	2866001	2971000	105000	13
Deletion	Chr10	3750771	3750776	5
Deletion	Chr9	5343001	5355000	12000	LOC_Os09g09850
Deletion	Chr3	6040637	6040639	2
Deletion	Chr4	6140446	6140450	4
Deletion	Chr9	6170214	6170219	5
Deletion	Chr2	6333331	6333332	1
Deletion	Chr5	9425168	9425169	1
Deletion	Chr4	9576661	9576726	65	LOC_Os04g17500
Deletion	Chr10	10770523	10770524	1	LOC_Os10g21150
Deletion	Chr2	11007218	11007240	22
Deletion	Chr12	12088123	12088124	1
Deletion	Chr11	12091222	12091225	3
Deletion	Chr7	13616580	13616581	1
Deletion	Chr6	13645992	13645993	1
Deletion	Chr8	14063904	14063906	2
Deletion	Chr8	14369995	14369997	2
Deletion	Chr8	15996837	15996856	19
Deletion	Chr8	17964425	17964451	26
Deletion	Chr3	26016476	26016483	7
Deletion	Chr6	26213883	26213974	91
Deletion	Chr8	27511001	27525000	14000	3
Deletion	Chr8	27530001	27549000	19000	3
Deletion	Chr6	30632753	30632754	1
Deletion	Chr4	30778952	30778953	1
Deletion	Chr1	30980261	30980263	2
Deletion	Chr1	42751278	42751283	5

Insertions: 22

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	11225231	11225233	3
Insertion	Chr1	21321815	21321816	2
Insertion	Chr10	12598038	12598098	61
Insertion	Chr10	15983382	15983459	78
Insertion	Chr10	4653582	4653582	1
Insertion	Chr10	523681	523683	3	LOC_Os10g01790
Insertion	Chr11	8352972	8352972	1
Insertion	Chr12	20017738	20017738	1
Insertion	Chr12	23189364	23189364	1
Insertion	Chr12	3398689	3398689	1
Insertion	Chr2	15755143	15755143	1
Insertion	Chr2	19774202	19774202	1
Insertion	Chr3	13936533	13936533	1
Insertion	Chr3	3839688	3839745	58
Insertion	Chr5	17267898	17267898	1
Insertion	Chr5	26834082	26834082	1
Insertion	Chr6	10507748	10507748	1
Insertion	Chr6	20836694	20836694	1
Insertion	Chr6	22522042	22522042	1
Insertion	Chr8	11636873	11636873	1
Insertion	Chr8	12578644	12578644	1
Insertion	Chr8	6483063	6483063	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	13338446	13338650

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	27192809	Chr1	40036020
Translocation	Chr5	27196592	Chr1	40036019	LOC_Os01g47560

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