Search Results

Mutant Information

Variant Information

Single base substitutions: 41

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13498807	G-A	HET	SYNONYMOUS_CODING
SBS	Chr1	18343581	A-T	HET	INTERGENIC
SBS	Chr2	16451028	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr3	4613734	T-C	HET	INTRON
SBS	Chr3	9863238	T-C	HOMO	INTERGENIC
SBS	Chr3	10677306	C-T	HET	INTERGENIC
SBS	Chr3	26637681	A-T	HET	INTERGENIC
SBS	Chr3	28949480	A-G	HET	INTERGENIC
SBS	Chr3	29248617	G-A	HET	INTERGENIC
SBS	Chr4	2542628	G-A	HET	INTRON
SBS	Chr4	9922368	C-T	HET	INTERGENIC
SBS	Chr4	14710972	G-A	HET	INTERGENIC
SBS	Chr4	16217749	G-A	HET	INTRON
SBS	Chr4	26540190	T-A	HET	INTERGENIC
SBS	Chr5	8523058	G-T	HET	INTERGENIC
SBS	Chr5	8523059	G-T	HET	INTERGENIC
SBS	Chr5	8523060	C-T	HET	INTERGENIC
SBS	Chr5	12761761	T-G	HET	INTERGENIC
SBS	Chr5	13895881	G-T	HET	INTERGENIC
SBS	Chr5	16672009	A-G	HET	INTERGENIC
SBS	Chr5	17004901	A-G	HET	INTERGENIC
SBS	Chr5	19282963	T-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os05g32900
SBS	Chr6	5628538	C-T	HOMO	INTERGENIC
SBS	Chr6	11837205	C-T	HOMO	INTERGENIC
SBS	Chr6	12919251	T-C	HOMO	INTRON
SBS	Chr6	14062864	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os06g24060
SBS	Chr6	26501642	C-A	HOMO	INTERGENIC
SBS	Chr7	12296850	G-T	HET	INTERGENIC
SBS	Chr7	12296851	G-T	HET	INTERGENIC
SBS	Chr7	27674650	A-G	HOMO	INTERGENIC
SBS	Chr7	28682163	A-C	HOMO	INTERGENIC
SBS	Chr8	22297892	C-T	HET	INTRON
SBS	Chr8	27730035	A-G	HET	INTRON
SBS	Chr9	5756947	C-T	HET	INTERGENIC
SBS	Chr10	472257	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os10g01720
SBS	Chr10	3057053	G-A	HET	INTERGENIC
SBS	Chr10	5619500	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os10g10214
SBS	Chr10	6456914	T-A	HET	INTERGENIC
SBS	Chr11	9660136	C-A	HOMO	SYNONYMOUS_CODING
SBS	Chr11	17352269	T-A	HOMO	UTR_5_PRIME
SBS	Chr11	26496390	C-T	HET	INTERGENIC

Deletions: 28

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	139163	139173	10
Deletion	Chr5	4043495	4043501	6	LOC_Os05g07550
Deletion	Chr12	4150974	4150975	1
Deletion	Chr4	5294360	5294361	1
Deletion	Chr4	5348461	5348465	4
Deletion	Chr4	5525455	5525473	18
Deletion	Chr4	11824537	11824548	11
Deletion	Chr7	12154985	12154986	1
Deletion	Chr12	14107605	14107606	1	LOC_Os12g24640
Deletion	Chr10	14517906	14517920	14
Deletion	Chr10	14585335	14585336	1
Deletion	Chr11	15871109	15871112	3
Deletion	Chr3	16573138	16573139	1
Deletion	Chr8	16938303	16938304	1
Deletion	Chr7	18743873	18743874	1
Deletion	Chr12	19773569	19773586	17
Deletion	Chr12	20718107	20718109	2	LOC_Os12g34170
Deletion	Chr11	22395825	22395826	1
Deletion	Chr6	22433238	22433239	1
Deletion	Chr7	22844432	22844530	98
Deletion	Chr6	24435374	24435377	3
Deletion	Chr3	27963785	27963786	1
Deletion	Chr5	29279263	29279265	2	LOC_Os05g51010
Deletion	Chr1	30866558	30866559	1
Deletion	Chr2	31387763	31387769	6	LOC_Os02g51260
Deletion	Chr4	33495137	33495138	1
Deletion	Chr1	37373582	37373583	1
Deletion	Chr1	39265765	39265768	3	LOC_Os01g67550

Insertions: 15

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	27163998	27163998	1
Insertion	Chr1	32161442	32161442	1
Insertion	Chr10	17794332	17794334	3
Insertion	Chr1	7409018	7409023	6
Insertion	Chr1	26666685	26666685	1
Insertion	Chr2	2418138	2418180	43
Insertion	Chr2	19899015	19899015	1
Insertion	Chr3	22091276	22091276	1
Insertion	Chr3	26759623	26759623	1
Insertion	Chr6	17684600	17684601	2
Insertion	Chr8	21690657	21690657	1
Insertion	Chr10	15485510	15485510	1
Insertion	Chr10	22713006	22713006	1
Insertion	Chr12	3666640	3666640	1
Insertion	Chr12	10508733	10508733	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	26299503	26733453	LOC_Os07g43990
Inversion	Chr7	26299517	26733459	LOC_Os07g43990

No Translocation

Main menu