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Mutant Information

Variant Information

Single base substitutions: 40

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	14053701	C-T	HOMO	INTRON
SBS	Chr1	30091536	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os01g52380
SBS	Chr1	34149247	C-T	HET	INTERGENIC
SBS	Chr10	12141132	A-G	HOMO	INTERGENIC
SBS	Chr10	14026546	T-C	HET	INTERGENIC
SBS	Chr10	14047583	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os10g26810
SBS	Chr10	18124815	G-T	HOMO	INTERGENIC
SBS	Chr10	18368228	C-G	HOMO	INTRON
SBS	Chr11	5421629	T-C	HET	INTRON
SBS	Chr11	7848123	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os11g14090
SBS	Chr12	15447934	A-T	HET	INTERGENIC
SBS	Chr12	15692222	G-C	HET	INTERGENIC
SBS	Chr12	20287861	A-T	HET	INTERGENIC
SBS	Chr12	8732490	A-G	HET	INTRON
SBS	Chr2	13533980	A-G	HET	INTRON
SBS	Chr2	15355536	A-G	HET	INTERGENIC
SBS	Chr2	21086010	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os02g35130
SBS	Chr2	21939326	G-A	HET	INTERGENIC
SBS	Chr2	3552219	C-T	HET	INTERGENIC
SBS	Chr3	13901344	C-T	HET	INTERGENIC
SBS	Chr3	15524461	C-T	HET	INTERGENIC
SBS	Chr3	33236404	T-C	HET	INTRON
SBS	Chr4	2586215	G-C	HET	INTERGENIC
SBS	Chr4	28396797	G-C	HOMO	INTERGENIC
SBS	Chr5	14585597	T-A	HET	INTERGENIC
SBS	Chr5	1976800	A-G	HET	UTR_5_PRIME
SBS	Chr5	2682378	G-A	HOMO	INTERGENIC
SBS	Chr6	11282564	C-T	HET	INTERGENIC
SBS	Chr6	12701406	G-A	HET	INTERGENIC
SBS	Chr6	14297973	C-T	HET	INTERGENIC
SBS	Chr6	22406834	T-A	HOMO	INTRON
SBS	Chr6	26169862	T-C	HOMO	INTERGENIC
SBS	Chr7	20866278	A-T	HOMO	INTERGENIC
SBS	Chr7	20866279	C-T	HOMO	INTERGENIC
SBS	Chr7	21716209	G-A	HOMO	INTERGENIC
SBS	Chr8	13968085	T-C	HET	INTRON
SBS	Chr8	19858098	T-A	HOMO	INTERGENIC
SBS	Chr8	24245634	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g38250
SBS	Chr9	10968900	T-C	HET	INTERGENIC
SBS	Chr9	20276932	C-A	HET	INTERGENIC

Deletions: 31

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	1861715	1861716	1	LOC_Os11g04460
Deletion	Chr10	2065656	2065663	7
Deletion	Chr7	2782215	2782248	33
Deletion	Chr3	2917220	2917222	2
Deletion	Chr4	4644455	4644456	1
Deletion	Chr7	5930674	5930681	7
Deletion	Chr8	5933067	5933068	1
Deletion	Chr7	7795237	7795238	1
Deletion	Chr8	8613585	8613586	1
Deletion	Chr10	9585164	9585165	1
Deletion	Chr5	10731606	10731607	1
Deletion	Chr7	11153010	11153011	1
Deletion	Chr8	13792219	13792279	60
Deletion	Chr7	13823875	13823884	9
Deletion	Chr8	13982746	13982747	1
Deletion	Chr6	14491248	14491249	1	LOC_Os06g24680
Deletion	Chr8	15070088	15070091	3
Deletion	Chr9	15890660	15890661	1
Deletion	Chr7	16123219	16123225	6
Deletion	Chr8	17319392	17319402	10
Deletion	Chr2	18678241	18678242	1
Deletion	Chr7	20237763	20237764	1
Deletion	Chr7	21204431	21204442	11
Deletion	Chr11	22843829	22843862	33	LOC_Os11g38550
Deletion	Chr3	23481158	23481192	34
Deletion	Chr8	24226414	24226427	13
Deletion	Chr8	25526633	25526634	1
Deletion	Chr1	25968020	25968039	19
Deletion	Chr5	27300827	27300872	45
Deletion	Chr3	28218034	28218128	94
Deletion	Chr1	30276538	30276539	1

Insertions: 16

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	23745733	23745739	7
Insertion	Chr1	26959828	26959828	1
Insertion	Chr1	28925543	28925584	42
Insertion	Chr1	39284513	39284513	1
Insertion	Chr12	10988335	10988335	1
Insertion	Chr12	3839248	3839248	1
Insertion	Chr3	18716593	18716593	1
Insertion	Chr3	22759606	22759617	12
Insertion	Chr4	33034902	33034902	1	LOC_Os04g55530
Insertion	Chr4	5474629	5474629	1
Insertion	Chr7	16960128	16960128	1
Insertion	Chr7	4229277	4229277	1
Insertion	Chr8	17969694	17969742	49
Insertion	Chr8	24481449	24481469	21
Insertion	Chr8	8547068	8547068	1
Insertion	Chr8	95845	95848	4

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr2	733745	733855	LOC_Os02g02250
Inversion	Chr2	9592719	9708190
Inversion	Chr2	9708340	10175826
Inversion	Chr2	10174598	10175823
Inversion	Chr10	22202871	22203111

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr7	119173	Chr2	3158072
Translocation	Chr7	119758	Chr2	17979285
Translocation	Chr10	13248880	Chr7	6861974	LOC_Os07g23460
Translocation	Chr5	27408695	Chr4	28035492

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