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Mutant Information

Variant Information

Single base substitutions: 23

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	23029290	T-C	HET	INTERGENIC
SBS	Chr10	13851380	G-C	HOMO	INTRON
SBS	Chr10	18132311	T-C	HET	INTERGENIC
SBS	Chr10	5424967	A-G	HET	INTERGENIC
SBS	Chr12	11919367	T-C	HET	INTERGENIC
SBS	Chr12	16685260	T-C	HET	INTERGENIC
SBS	Chr12	26596282	G-A	HET	INTERGENIC
SBS	Chr2	21360200	G-A	HOMO	INTERGENIC
SBS	Chr3	14492001	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g25350
SBS	Chr3	19689134	A-G	HET	INTERGENIC
SBS	Chr3	20243229	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g36530
SBS	Chr3	33598415	A-G	HOMO	INTERGENIC
SBS	Chr4	14155898	G-A	HOMO	INTERGENIC
SBS	Chr4	31792918	T-G	HET	INTRON
SBS	Chr4	34266962	G-A	HET	INTERGENIC
SBS	Chr4	9081809	G-C	HOMO	INTRON
SBS	Chr5	12260653	G-A	HET	INTERGENIC
SBS	Chr6	29903430	G-A	HET	SYNONYMOUS_CODING
SBS	Chr8	15147440	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr8	15147441	T-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os08g24980
SBS	Chr8	26170925	G-A	HET	INTERGENIC
SBS	Chr8	26446099	T-C	HET	INTERGENIC
SBS	Chr9	3474723	T-C	HOMO	INTERGENIC

Deletions: 29

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	2646374	2646375	1
Deletion	Chr6	3212268	3212269	1	LOC_Os06g06802
Deletion	Chr5	5616321	5616325	4
Deletion	Chr9	5933109	5933110	1
Deletion	Chr7	6156198	6156199	1	LOC_Os07g11160
Deletion	Chr3	9776199	9776200	1
Deletion	Chr4	10014698	10014724	26
Deletion	Chr4	10111674	10111675	1
Deletion	Chr10	10651599	10651602	3
Deletion	Chr7	12164891	12164892	1
Deletion	Chr3	12909001	12942000	33000	3
Deletion	Chr7	12946010	12946018	8
Deletion	Chr6	13217155	13217158	3
Deletion	Chr7	13306013	13306017	4
Deletion	Chr9	13432147	13432176	29
Deletion	Chr10	14613414	14613415	1	LOC_Os10g28150
Deletion	Chr11	14925126	14925127	1
Deletion	Chr9	15191959	15191960	1	LOC_Os09g25360
Deletion	Chr8	15618207	15618208	1
Deletion	Chr6	16843972	16843973	1
Deletion	Chr3	17323305	17323461	156
Deletion	Chr8	17545421	17545423	2
Deletion	Chr12	22271275	22271276	1
Deletion	Chr5	26454407	26454409	2
Deletion	Chr12	27265001	27290000	25000	5
Deletion	Chr12	27291001	27324000	33000	7
Deletion	Chr12	27325162	27325171	9	LOC_Os12g44060
Deletion	Chr4	27393175	27393176	1
Deletion	Chr4	33654286	33654287	1

Insertions: 16

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	34881089	34881089	1
Insertion	Chr10	8360437	8360459	23
Insertion	Chr11	15036173	15036173	1
Insertion	Chr11	21120048	21120048	1
Insertion	Chr11	22688678	22688710	33
Insertion	Chr12	25939717	25939717	1
Insertion	Chr4	16536186	16536260	75
Insertion	Chr4	27312022	27312025	4
Insertion	Chr4	30563542	30563542	1
Insertion	Chr5	17663564	17663564	1
Insertion	Chr5	29813952	29813952	1
Insertion	Chr5	952186	952188	3	LOC_Os05g02680
Insertion	Chr6	22369572	22369572	1
Insertion	Chr6	9003058	9003061	4
Insertion	Chr7	15217823	15217824	2
Insertion	Chr9	4900406	4900406	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	702521	702858
Inversion	Chr8	23659685	23659929

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2
Translocation	Chr12	27324584	Chr11	19169825
Translocation	Chr11	28128010	Chr3	18202757
Translocation	Chr11	28128025	Chr3	18217413

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