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Mutant Information

Variant Information

Single base substitutions: 38

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12453697	C-T	HET	INTERGENIC
SBS	Chr1	1813418	T-C	HOMO	INTERGENIC
SBS	Chr1	28328379	T-A	HET	INTERGENIC
SBS	Chr1	38278693	G-C	HOMO	UTR_5_PRIME
SBS	Chr10	10096907	T-C	HOMO	INTERGENIC
SBS	Chr11	23814776	T-G	HOMO	INTERGENIC
SBS	Chr11	9794200	T-A	HOMO	INTERGENIC
SBS	Chr12	17798136	C-T	HET	INTERGENIC
SBS	Chr2	19589718	C-T	HET	INTERGENIC
SBS	Chr2	22693904	T-A	HET	UTR_3_PRIME
SBS	Chr2	23073537	G-A	HET	INTERGENIC
SBS	Chr2	28178603	G-T	HET	INTERGENIC
SBS	Chr3	18106465	G-T	HET	INTERGENIC
SBS	Chr3	18814061	G-C	HET	INTERGENIC
SBS	Chr3	21951766	T-C	HET	INTRON
SBS	Chr3	35792365	C-A	HOMO	INTRON
SBS	Chr3	8809141	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g15970
SBS	Chr4	23338071	G-T	HOMO	INTERGENIC
SBS	Chr4	346890	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g01500
SBS	Chr4	3560657	G-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g06770
SBS	Chr4	9537826	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr5	7977399	C-T	HET	INTERGENIC
SBS	Chr6	13185164	T-A	HET	INTRON
SBS	Chr6	14860569	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os06g25370
SBS	Chr6	15890760	C-T	HET	INTERGENIC
SBS	Chr6	22417130	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr6	25719886	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g42790
SBS	Chr7	11172597	T-G	HET	INTRON
SBS	Chr7	11929396	C-T	HET	INTERGENIC
SBS	Chr7	12373379	T-C	HET	INTRON
SBS	Chr7	18288741	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os07g30890
SBS	Chr7	5490354	C-T	HOMO	INTERGENIC
SBS	Chr8	19635738	G-A	HET	INTERGENIC
SBS	Chr8	2596687	C-T	HET	INTERGENIC
SBS	Chr8	5657205	C-T	HET	INTERGENIC
SBS	Chr9	21802903	G-T	HOMO	INTRON
SBS	Chr9	2865285	T-C	HOMO	INTERGENIC
SBS	Chr9	5357391	C-T	HOMO	SYNONYMOUS_CODING

Deletions: 35

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	160254	160256	2
Deletion	Chr12	555290	555291	1
Deletion	Chr7	1405933	1405934	1	LOC_Os07g03520
Deletion	Chr4	2216804	2216805	1
Deletion	Chr7	2867141	2867148	7
Deletion	Chr11	3229700	3229702	2
Deletion	Chr6	3377884	3377887	3	LOC_Os06g07090
Deletion	Chr12	3987594	3987595	1
Deletion	Chr2	4406896	4406897	1
Deletion	Chr9	5146296	5146297	1
Deletion	Chr2	7378908	7378918	10
Deletion	Chr4	8030837	8030849	12
Deletion	Chr9	9324430	9324431	1
Deletion	Chr9	9932495	9932500	5
Deletion	Chr5	10801929	10801948	19
Deletion	Chr4	12289926	12289936	10
Deletion	Chr9	12930375	12930379	4
Deletion	Chr10	15025772	15025775	3
Deletion	Chr4	15377439	15377440	1
Deletion	Chr1	15748161	15748163	2
Deletion	Chr9	16363231	16363233	2
Deletion	Chr2	16609303	16609327	24	LOC_Os02g28040
Deletion	Chr5	19478647	19478659	12
Deletion	Chr9	20083091	20083095	4	LOC_Os09g34020
Deletion	Chr12	20167328	20167337	9	LOC_Os12g33340
Deletion	Chr6	21619112	21619119	7
Deletion	Chr4	23386923	23386924	1
Deletion	Chr11	24404036	24404037	1
Deletion	Chr5	25043058	25043069	11	LOC_Os05g43130
Deletion	Chr2	28075001	28110000	35000	6
Deletion	Chr7	29373393	29373401	8
Deletion	Chr1	32086520	32086530	10
Deletion	Chr3	33674927	33674930	3
Deletion	Chr4	33930877	33930884	7
Deletion	Chr1	35836857	35836858	1

Insertions: 16

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	2237856	2237881	26
Insertion	Chr11	11895096	11895096	1
Insertion	Chr11	12096096	12096134	39
Insertion	Chr11	21483942	21483942	1
Insertion	Chr11	27641300	27641328	29
Insertion	Chr12	12037436	12037436	1
Insertion	Chr12	4118059	4118060	2
Insertion	Chr2	24760404	24760404	1
Insertion	Chr3	9832685	9832686	2	LOC_Os03g17680
Insertion	Chr5	1075671	1075671	1
Insertion	Chr5	24432561	24432561	1
Insertion	Chr5	5566143	5566190	48
Insertion	Chr7	14420364	14420364	1
Insertion	Chr7	20333507	20333507	1
Insertion	Chr8	16486458	16486526	69
Insertion	Chr8	27306021	27306021	1

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	14138510	14138642
Inversion	Chr6	19593482	19593825	LOC_Os06g33660
Inversion	Chr4	25538162	25538547	LOC_Os04g43140
Inversion	Chr3	31433806	31434155

Translocations: 8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	2071466	Chr5	11351564	LOC_Os12g04830
Translocation	Chr2	3009119	Chr1	42902026
Translocation	Chr11	9337675	Chr10	2582301
Translocation	Chr11	9337713	Chr10	2582586
Translocation	Chr9	18950302	Chr4	20607423	2
Translocation	Chr9	18950308	Chr4	20607420	2
Translocation	Chr10	22220415	Chr6	15394311
Translocation	Chr10	22220420	Chr6	13699979

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