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Mutant Information

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1246612	G-T	HET	INTERGENIC
SBS	Chr1	25984481	C-T	HET	INTERGENIC
SBS	Chr1	40112599	G-A	HET	INTERGENIC
SBS	Chr2	18292238	G-A	HET	INTRON
SBS	Chr2	29781648	C-A	HOMO	INTERGENIC
SBS	Chr3	4927962	G-A	HOMO	INTERGENIC
SBS	Chr3	14307349	A-T	HET	INTERGENIC
SBS	Chr3	18832171	C-A	HET	INTERGENIC
SBS	Chr3	19848678	C-T	HET	INTERGENIC
SBS	Chr4	6358827	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr4	10799937	G-A	HOMO	INTERGENIC
SBS	Chr4	20974308	A-G	HET	INTERGENIC
SBS	Chr4	21656545	A-C	HOMO	INTERGENIC
SBS	Chr4	27645692	A-G	HET	UTR_5_PRIME
SBS	Chr4	28347145	C-T	HET	INTERGENIC
SBS	Chr5	1415782	T-C	HET	INTERGENIC
SBS	Chr5	5764703	C-G	HET	INTRON
SBS	Chr5	22799397	T-C	HET	INTERGENIC
SBS	Chr6	27564691	C-T	HET	INTERGENIC
SBS	Chr7	19379639	A-T	HOMO	INTRON
SBS	Chr8	24287020	G-A	HOMO	INTRON
SBS	Chr8	26057396	G-A	HET	INTERGENIC
SBS	Chr9	10822406	G-T	HET	INTERGENIC
SBS	Chr9	13507428	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os09g22350
SBS	Chr10	4688111	T-C	HET	NON_SYNONYMOUS_CODING	LOC_Os10g08650
SBS	Chr10	5295578	C-T	HOMO	INTRON
SBS	Chr10	5847239	G-A	HOMO	INTERGENIC
SBS	Chr10	11163229	T-C	HOMO	INTERGENIC
SBS	Chr11	1480409	G-T	HET	INTERGENIC
SBS	Chr11	11680983	C-G	HET	INTERGENIC
SBS	Chr11	11680984	G-T	HET	INTERGENIC
SBS	Chr11	23057673	A-C	HET	INTERGENIC
SBS	Chr12	21228946	A-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os12g34870
SBS	Chr12	21320543	T-A	HET	INTRON

Deletions: 32

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	4209219	4209220	1
Deletion	Chr5	5134396	5134486	90
Deletion	Chr4	5222910	5222912	2
Deletion	Chr12	6673814	6673815	1
Deletion	Chr10	6988351	6988352	1
Deletion	Chr7	7450001	7648000	198000	31
Deletion	Chr2	7498119	7498125	6
Deletion	Chr5	10352396	10352397	1	LOC_Os05g18000
Deletion	Chr2	11311985	11311986	1
Deletion	Chr3	12280985	12280994	9
Deletion	Chr12	13090058	13090060	2
Deletion	Chr12	13646740	13646741	1
Deletion	Chr12	13868001	13974000	106000	14
Deletion	Chr3	14105074	14105128	54
Deletion	Chr8	14221169	14221174	5
Deletion	Chr12	14685624	14685625	1
Deletion	Chr12	14913406	14913407	1
Deletion	Chr5	16931572	16931573	1	LOC_Os05g28870
Deletion	Chr3	18095456	18095457	1
Deletion	Chr11	19855181	19855182	1
Deletion	Chr7	20530580	20530594	14
Deletion	Chr7	22152698	22152718	20
Deletion	Chr2	22879139	22879141	2
Deletion	Chr6	23305343	23305344	1
Deletion	Chr4	25008434	25008435	1	LOC_Os04g42270
Deletion	Chr11	27177320	27177326	6
Deletion	Chr5	27811800	27811802	2
Deletion	Chr5	28856069	28856070	1
Deletion	Chr1	29861491	29861494	3	LOC_Os01g51950
Deletion	Chr1	29866893	29866895	2
Deletion	Chr1	30664192	30664193	1
Deletion	Chr3	32353910	32353918	8

Insertions: 16

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	12074075	12074075	1
Insertion	Chr3	4171933	4171933	1
Insertion	Chr1	33099138	33099138	1
Insertion	Chr1	34389852	34389852	1
Insertion	Chr2	19423395	19423395	1
Insertion	Chr2	23923605	23923605	1
Insertion	Chr3	22849435	22849435	1
Insertion	Chr4	7453018	7453018	1
Insertion	Chr4	22693510	22693510	1
Insertion	Chr5	10732324	10732324	1
Insertion	Chr6	8132192	8132192	1
Insertion	Chr7	7458718	7458718	1
Insertion	Chr8	8538586	8538586	1
Insertion	Chr11	9982149	9982149	1
Insertion	Chr12	20991520	20991520	1
Insertion	Chr12	23528995	23528995	1

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	2349568	2349797
Inversion	Chr8	3986102	3986364	LOC_Os08g07120
Inversion	Chr9	16673210	16673426
Inversion	Chr11	17017084	17559487	LOC_Os11g30200
Inversion	Chr11	17017098	17559537	LOC_Os11g30200
Inversion	Chr7	18340684	19328207	LOC_Os07g30980

Translocations: 10

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	5112478	Chr2	31527469
Translocation	Chr6	5112487	Chr2	31584956
Translocation	Chr8	14194875	Chr2	31584961	LOC_Os08g23440
Translocation	Chr8	14194876	Chr2	31585415	LOC_Os08g23440
Translocation	Chr9	16386839	Chr6	1605398	LOC_Os06g28770
Translocation	Chr10	18940554	Chr8	13905772	LOC_Os10g35436
Translocation	Chr10	19785985	Chr5	29565021
Translocation	Chr10	19802011	Chr5	29565222	LOC_Os10g36950
Translocation	Chr4	22459334	Chr2	31508234	LOC_Os02g37150
Translocation	Chr4	22459454	Chr2	31527467	LOC_Os02g37150

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