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Mutant Information |
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Mutant Name | FN4488-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN4488-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) |
Variant Information |
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Single base substitutions: 34
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 4846341 | A-G | HET | INTERGENIC | |
SBS | Chr1 | 11339485 | G-A | HET | INTERGENIC | |
SBS | Chr1 | 14938797 | G-A | HET | INTERGENIC | |
SBS | Chr1 | 20293225 | G-A | HET | INTERGENIC | |
SBS | Chr1 | 37776031 | T-C | HET | INTRON | |
SBS | Chr2 | 14376994 | G-T | HOMO | NON_SYNONYMOUS_CODING | LOC_Os02g24780 |
SBS | Chr2 | 28022100 | T-G | HOMO | INTERGENIC | |
SBS | Chr2 | 28022105 | A-T | HOMO | INTERGENIC | |
SBS | Chr3 | 13230367 | T-C | HET | INTRON | |
SBS | Chr3 | 18024764 | A-T | HET | INTERGENIC | |
SBS | Chr3 | 26998530 | G-C | HOMO | INTERGENIC | |
SBS | Chr3 | 31546130 | A-T | HET | INTERGENIC | |
SBS | Chr4 | 20879617 | C-T | HET | INTERGENIC | |
SBS | Chr4 | 28460901 | G-A | HET | INTERGENIC | |
SBS | Chr5 | 3048868 | A-C | HET | INTERGENIC | |
SBS | Chr5 | 3425622 | G-A | HET | INTRON | |
SBS | Chr5 | 4720163 | C-T | HET | INTERGENIC | |
SBS | Chr5 | 24389716 | G-T | HOMO | SYNONYMOUS_CODING | |
SBS | Chr5 | 28467247 | A-G | HOMO | INTERGENIC | |
SBS | Chr6 | 2190167 | A-G | HET | INTRON | |
SBS | Chr6 | 24571556 | G-A | HET | INTERGENIC | |
SBS | Chr7 | 1034523 | T-C | HOMO | INTERGENIC | |
SBS | Chr7 | 6524514 | G-A | HOMO | INTERGENIC | |
SBS | Chr7 | 13531348 | C-T | HET | INTRON | |
SBS | Chr7 | 17791197 | G-T | HOMO | INTRON | |
SBS | Chr7 | 20722441 | C-T | HET | INTERGENIC | |
SBS | Chr7 | 24641655 | A-T | HOMO | INTERGENIC | |
SBS | Chr8 | 18808807 | C-T | HOMO | INTRON | |
SBS | Chr9 | 4789901 | T-C | HOMO | SYNONYMOUS_CODING | |
SBS | Chr9 | 15338656 | C-T | HET | UTR_3_PRIME | |
SBS | Chr10 | 1388869 | T-C | HET | INTRON | |
SBS | Chr10 | 6985559 | G-A | HET | SYNONYMOUS_CODING | |
SBS | Chr10 | 12016933 | G-C | HET | NON_SYNONYMOUS_CODING | LOC_Os10g23050 |
SBS | Chr10 | 22855155 | T-C | HOMO | INTERGENIC |
Deletions: 27
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr10 | 1584028 | 1584042 | 14 | |
Deletion | Chr12 | 2199527 | 2199529 | 2 | |
Deletion | Chr9 | 2392654 | 2392655 | 1 | |
Deletion | Chr4 | 3408640 | 3408641 | 1 | |
Deletion | Chr8 | 5886890 | 5886960 | 70 | |
Deletion | Chr12 | 9834180 | 9834181 | 1 | |
Deletion | Chr7 | 10608967 | 10608969 | 2 | |
Deletion | Chr6 | 11114045 | 11114051 | 6 | LOC_Os06g19520 |
Deletion | Chr2 | 13119986 | 13120002 | 16 | |
Deletion | Chr5 | 13135055 | 13135056 | 1 | |
Deletion | Chr3 | 13208911 | 13208912 | 1 | |
Deletion | Chr9 | 14436345 | 14436347 | 2 | |
Deletion | Chr3 | 15481203 | 15481204 | 1 | |
Deletion | Chr2 | 17812231 | 17812330 | 99 | |
Deletion | Chr6 | 19975690 | 19975745 | 55 | |
Deletion | Chr3 | 20427846 | 20427857 | 11 | |
Deletion | Chr3 | 20711468 | 20711472 | 4 | |
Deletion | Chr5 | 21367883 | 21367885 | 2 | |
Deletion | Chr6 | 21693605 | 21693606 | 1 | |
Deletion | Chr11 | 25275489 | 25275490 | 1 | |
Deletion | Chr11 | 25892495 | 25892554 | 59 | |
Deletion | Chr7 | 27528818 | 27528821 | 3 | LOC_Os07g46130 |
Deletion | Chr5 | 27673475 | 27673486 | 11 | |
Deletion | Chr6 | 29200695 | 29200702 | 7 | |
Deletion | Chr3 | 30670638 | 30670647 | 9 | |
Deletion | Chr3 | 31099351 | 31099352 | 1 | |
Deletion | Chr3 | 33517097 | 33517098 | 1 |
Insertions: 16
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr1 | 40394738 | 40394739 | 2 | |
Insertion | Chr3 | 9160813 | 9160814 | 2 | |
Insertion | Chr5 | 26600886 | 26600886 | 1 | |
Insertion | Chr6 | 182241 | 182241 | 1 | LOC_Os06g01290 |
Insertion | Chr8 | 9009040 | 9009040 | 1 | |
Insertion | Chr8 | 12697709 | 12697710 | 2 | |
Insertion | Chr10 | 15669689 | 15669689 | 1 | |
Insertion | Chr2 | 5972057 | 5972058 | 2 | |
Insertion | Chr2 | 26485504 | 26485512 | 9 | |
Insertion | Chr3 | 15789848 | 15789875 | 28 | |
Insertion | Chr4 | 575177 | 575177 | 1 | |
Insertion | Chr5 | 22612458 | 22612458 | 1 | LOC_Os05g38540 |
Insertion | Chr6 | 19329832 | 19329896 | 65 | |
Insertion | Chr11 | 25271686 | 25271686 | 1 | |
Insertion | Chr12 | 9662372 | 9662372 | 1 | LOC_Os12g16850 |
Insertion | Chr12 | 10238432 | 10238432 | 1 |
Inversions: 2
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr5 | 9002665 | 9002788 | |
Inversion | Chr3 | 26001180 | 26001517 | LOC_Os03g45990 |
Translocations: 2
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr3 | 5407572 | Chr2 | 4561922 | |
Translocation | Chr3 | 5434014 | Chr2 | 4561920 | 2 |