Search Nipponbare

Mutant Information

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11339485	G-A	HET	INTERGENIC
SBS	Chr1	14938797	G-A	HET	INTERGENIC
SBS	Chr1	20293225	G-A	HET	INTERGENIC
SBS	Chr1	37776031	T-C	HET	INTRON
SBS	Chr1	4846341	A-G	HET	INTERGENIC
SBS	Chr10	12016933	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os10g23050
SBS	Chr10	1388869	T-C	HET	INTRON
SBS	Chr10	22855155	T-C	HOMO	INTERGENIC
SBS	Chr10	6985559	G-A	HET	SYNONYMOUS_CODING
SBS	Chr2	14376994	G-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g24780
SBS	Chr2	28022100	T-G	HOMO	INTERGENIC
SBS	Chr2	28022105	A-T	HOMO	INTERGENIC
SBS	Chr3	13230367	T-C	HET	INTRON
SBS	Chr3	18024764	A-T	HET	INTERGENIC
SBS	Chr3	26998530	G-C	HOMO	INTERGENIC
SBS	Chr3	31546130	A-T	HET	INTERGENIC
SBS	Chr4	20879617	C-T	HET	INTERGENIC
SBS	Chr4	28460901	G-A	HET	INTERGENIC
SBS	Chr5	24389716	G-T	HOMO	SYNONYMOUS_CODING
SBS	Chr5	28467247	A-G	HOMO	INTERGENIC
SBS	Chr5	3048868	A-C	HET	INTERGENIC
SBS	Chr5	3425622	G-A	HET	INTRON
SBS	Chr5	4720163	C-T	HET	INTERGENIC
SBS	Chr6	2190167	A-G	HET	INTRON
SBS	Chr6	24571556	G-A	HET	INTERGENIC
SBS	Chr7	1034523	T-C	HOMO	INTERGENIC
SBS	Chr7	13531348	C-T	HET	INTRON
SBS	Chr7	17791197	G-T	HOMO	INTRON
SBS	Chr7	20722441	C-T	HET	INTERGENIC
SBS	Chr7	24641655	A-T	HOMO	INTERGENIC
SBS	Chr7	6524514	G-A	HOMO	INTERGENIC
SBS	Chr8	18808807	C-T	HOMO	INTRON
SBS	Chr9	15338656	C-T	HET	UTR_3_PRIME
SBS	Chr9	4789901	T-C	HOMO	SYNONYMOUS_CODING

Deletions: 27

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	1584028	1584042	14
Deletion	Chr12	2199527	2199529	2
Deletion	Chr9	2392654	2392655	1
Deletion	Chr4	3408640	3408641	1
Deletion	Chr8	5886890	5886960	70
Deletion	Chr12	9834180	9834181	1
Deletion	Chr7	10608967	10608969	2
Deletion	Chr6	11114045	11114051	6	LOC_Os06g19520
Deletion	Chr2	13119986	13120002	16
Deletion	Chr5	13135055	13135056	1
Deletion	Chr3	13208911	13208912	1
Deletion	Chr9	14436345	14436347	2
Deletion	Chr3	15481203	15481204	1
Deletion	Chr2	17812231	17812330	99
Deletion	Chr6	19975690	19975745	55
Deletion	Chr3	20427846	20427857	11
Deletion	Chr3	20711468	20711472	4
Deletion	Chr5	21367883	21367885	2
Deletion	Chr6	21693605	21693606	1
Deletion	Chr11	25275489	25275490	1
Deletion	Chr11	25892495	25892554	59
Deletion	Chr7	27528818	27528821	3	LOC_Os07g46130
Deletion	Chr5	27673475	27673486	11
Deletion	Chr6	29200695	29200702	7
Deletion	Chr3	30670638	30670647	9
Deletion	Chr3	31099351	31099352	1
Deletion	Chr3	33517097	33517098	1

Insertions: 16

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	40394738	40394739	2
Insertion	Chr10	15669689	15669689	1
Insertion	Chr11	25271686	25271686	1
Insertion	Chr12	10238432	10238432	1
Insertion	Chr12	9662372	9662372	1	LOC_Os12g16850
Insertion	Chr2	26485504	26485512	9
Insertion	Chr2	5972057	5972058	2
Insertion	Chr3	15789848	15789875	28
Insertion	Chr3	9160813	9160814	2
Insertion	Chr4	575177	575177	1
Insertion	Chr5	22612458	22612458	1	LOC_Os05g38540
Insertion	Chr5	26600886	26600886	1
Insertion	Chr6	182241	182241	1	LOC_Os06g01290
Insertion	Chr6	19329832	19329896	65
Insertion	Chr8	12697709	12697710	2
Insertion	Chr8	9009040	9009040	1

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	9002665	9002788
Inversion	Chr3	26001180	26001517	LOC_Os03g45990

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr3	5407572	Chr2	4561922
Translocation	Chr3	5434014	Chr2	4561920	2

Main menu