Search Results
Mutant Information |
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Mutant Name | FN449-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN449-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) |
Variant Information |
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Single base substitutions: 39
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 29950695 | A-G | HET | INTRON | |
SBS | Chr2 | 1012654 | C-A | HET | INTERGENIC | |
SBS | Chr2 | 4862115 | T-C | HET | INTRON | |
SBS | Chr2 | 6207090 | G-A | HET | UTR_3_PRIME | |
SBS | Chr2 | 30286283 | G-A | HET | INTERGENIC | |
SBS | Chr2 | 35046979 | C-T | HET | INTERGENIC | |
SBS | Chr3 | 19662869 | C-G | HET | INTRON | |
SBS | Chr3 | 36363193 | C-A | HET | INTERGENIC | |
SBS | Chr4 | 7193859 | C-G | HET | INTERGENIC | |
SBS | Chr4 | 12435185 | A-T | HET | SYNONYMOUS_CODING | |
SBS | Chr4 | 29288240 | A-T | HOMO | INTERGENIC | |
SBS | Chr4 | 34891484 | G-A | HOMO | INTERGENIC | |
SBS | Chr5 | 581506 | C-A | HET | INTERGENIC | |
SBS | Chr5 | 581517 | T-G | HET | INTERGENIC | |
SBS | Chr5 | 22213657 | G-T | HET | INTERGENIC | |
SBS | Chr5 | 28034888 | G-T | HET | SPLICE_SITE_DONOR | LOC_Os05g48870 |
SBS | Chr6 | 15557336 | C-T | HET | SYNONYMOUS_CODING | |
SBS | Chr6 | 16663852 | C-T | HET | INTERGENIC | |
SBS | Chr7 | 2458484 | T-G | HOMO | UTR_3_PRIME | |
SBS | Chr7 | 6656326 | T-G | HOMO | INTERGENIC | |
SBS | Chr7 | 7179562 | T-A | HET | INTERGENIC | |
SBS | Chr7 | 7490280 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os07g13060 |
SBS | Chr7 | 15483473 | T-C | HET | INTERGENIC | |
SBS | Chr8 | 2523257 | C-T | HET | INTERGENIC | |
SBS | Chr8 | 28349749 | T-A | HOMO | NON_SYNONYMOUS_CODING | LOC_Os08g45160 |
SBS | Chr9 | 18474927 | G-A | HET | INTERGENIC | |
SBS | Chr10 | 4042356 | A-T | HET | INTERGENIC | |
SBS | Chr10 | 8309120 | T-A | HET | INTERGENIC | |
SBS | Chr10 | 8428293 | A-G | HET | INTERGENIC | |
SBS | Chr10 | 21111695 | A-G | HOMO | INTRON | |
SBS | Chr10 | 22754694 | G-T | HOMO | INTRON | |
SBS | Chr11 | 14800675 | G-A | HOMO | SYNONYMOUS_CODING | |
SBS | Chr11 | 24646165 | G-A | HET | NON_SYNONYMOUS_CODING | LOC_Os11g41130 |
SBS | Chr12 | 2880586 | A-T | HET | INTERGENIC | |
SBS | Chr12 | 10738249 | G-T | HET | INTERGENIC | |
SBS | Chr12 | 12181699 | G-T | HET | INTRON | |
SBS | Chr12 | 12181700 | C-T | HET | INTRON | |
SBS | Chr12 | 19741952 | G-A | HOMO | INTRON | |
SBS | Chr12 | 23066089 | T-C | HET | INTRON |
Deletions: 16
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr2 | 422398 | 422412 | 14 | |
Deletion | Chr7 | 1929949 | 1929950 | 1 | |
Deletion | Chr12 | 2140001 | 2880000 | 740000 | 112 |
Deletion | Chr1 | 4630809 | 4630811 | 2 | |
Deletion | Chr6 | 5040001 | 5138000 | 98000 | 20 |
Deletion | Chr7 | 6534053 | 6534057 | 4 | |
Deletion | Chr5 | 9935870 | 9935871 | 1 | |
Deletion | Chr12 | 10738243 | 10738244 | 1 | |
Deletion | Chr12 | 15517904 | 15517906 | 2 | |
Deletion | Chr11 | 17288686 | 17288690 | 4 | |
Deletion | Chr12 | 24302505 | 24302507 | 2 | |
Deletion | Chr8 | 25274049 | 25274051 | 2 | |
Deletion | Chr6 | 25623787 | 25623789 | 2 | |
Deletion | Chr8 | 27976059 | 27976061 | 2 | |
Deletion | Chr3 | 34110305 | 34110333 | 28 | |
Deletion | Chr2 | 34689541 | 34689543 | 2 | LOC_Os02g56610 |
Insertions: 5
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr12 | 23521192 | 23521195 | 4 | LOC_Os12g38320 |
Insertion | Chr2 | 29365387 | 29365389 | 3 | LOC_Os02g47980 |
Insertion | Chr1 | 18973290 | 18973290 | 1 | |
Insertion | Chr4 | 33224347 | 33224347 | 1 | |
Insertion | Chr8 | 23961964 | 23961964 | 1 |
Inversions: 1
Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
---|---|---|---|---|
Inversion | Chr8 | 16899669 | 20420901 |
Translocations: 4
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr12 | 10482831 | Chr4 | 3613588 | LOC_Os04g06850 |
Translocation | Chr11 | 10814759 | Chr8 | 22530032 | |
Translocation | Chr12 | 23372667 | Chr11 | 26968976 | LOC_Os11g44600 |
Translocation | Chr6 | 27804585 | Chr3 | 25799371 |