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Mutant Information

Variant Information

Single base substitutions: 33

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11357561	G-A	HOMO	INTERGENIC
SBS	Chr1	6377301	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os01g11790
SBS	Chr10	21759404	C-T	HET	INTRON
SBS	Chr10	4481505	C-T	HET	INTERGENIC
SBS	Chr10	8469693	A-G	HOMO	INTERGENIC
SBS	Chr11	10556348	G-T	HET	INTERGENIC
SBS	Chr12	15379598	C-A	HOMO	INTERGENIC
SBS	Chr12	20229735	C-T	HET	INTERGENIC
SBS	Chr12	20229736	C-T	HET	INTERGENIC
SBS	Chr12	20293277	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g33610
SBS	Chr12	24962161	C-T	HET	SYNONYMOUS_CODING
SBS	Chr12	26416650	C-T	HET	SYNONYMOUS_CODING
SBS	Chr2	18978404	G-A	HOMO	INTERGENIC
SBS	Chr2	2456486	G-A	HOMO	INTERGENIC
SBS	Chr2	29401125	G-C	HOMO	NON_SYNONYMOUS_CODING	LOC_Os02g48030
SBS	Chr3	1241261	T-A	HET	INTRON
SBS	Chr3	6543356	T-A	HOMO	INTERGENIC
SBS	Chr4	15990182	C-A	HOMO	INTERGENIC
SBS	Chr4	26205175	T-A	HET	INTERGENIC
SBS	Chr4	29618440	T-A	HOMO	INTERGENIC
SBS	Chr4	29618441	A-T	HOMO	INTERGENIC
SBS	Chr4	29793493	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os04g49950
SBS	Chr4	5413471	G-A	HET	INTERGENIC
SBS	Chr6	26995962	C-T	HET	INTERGENIC
SBS	Chr7	19522071	A-C	HET	NON_SYNONYMOUS_CODING	LOC_Os07g32690
SBS	Chr8	12627368	G-T	HET	INTRON
SBS	Chr8	15232390	T-C	HET	INTERGENIC
SBS	Chr8	18522723	C-T	HET	INTERGENIC
SBS	Chr8	19295023	T-A	HET	INTERGENIC
SBS	Chr8	26645490	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os08g42160
SBS	Chr8	5814561	T-A	HET	INTRON
SBS	Chr8	5845981	T-A	HET	INTERGENIC
SBS	Chr9	16457551	T-A	HET	INTRON

Deletions: 39

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	419940	419958	18	LOC_Os02g01750
Deletion	Chr10	568481	568534	53
Deletion	Chr12	1097898	1097909	11
Deletion	Chr8	2539084	2539088	4
Deletion	Chr12	2990177	2990179	2	LOC_Os12g06270
Deletion	Chr4	3486929	3486935	6
Deletion	Chr3	3610836	3610837	1
Deletion	Chr8	4273561	4273565	4
Deletion	Chr9	5765821	5765822	1
Deletion	Chr4	9643602	9643604	2
Deletion	Chr9	10205057	10205068	11
Deletion	Chr1	11444117	11444123	6
Deletion	Chr7	11963133	11963139	6
Deletion	Chr10	11989368	11989372	4
Deletion	Chr5	12084591	12084598	7
Deletion	Chr4	12187785	12187786	1	LOC_Os04g21560
Deletion	Chr8	13732161	13732169	8
Deletion	Chr10	16241276	16241279	3
Deletion	Chr4	17102396	17102397	1
Deletion	Chr4	18147648	18147654	6
Deletion	Chr12	19652252	19652261	9
Deletion	Chr12	21448731	21448732	1
Deletion	Chr6	21931023	21931024	1
Deletion	Chr4	22688539	22688540	1
Deletion	Chr1	23075416	23075419	3
Deletion	Chr6	23438249	23438250	1
Deletion	Chr8	23472998	23472999	1
Deletion	Chr12	23802903	23802923	20
Deletion	Chr12	25608275	25608277	2	LOC_Os12g41290
Deletion	Chr5	27070333	27070336	3
Deletion	Chr6	27466835	27466836	1
Deletion	Chr1	31135548	31135576	28
Deletion	Chr1	31508313	31508314	1
Deletion	Chr2	32415862	32415863	1
Deletion	Chr1	33598893	33598901	8
Deletion	Chr2	34581468	34581469	1
Deletion	Chr4	34728219	34728220	1
Deletion	Chr1	37285892	37285893	1
Deletion	Chr1	38039042	38039060	18

Insertions: 12

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	16976420	16976421	2
Insertion	Chr11	3199424	3199424	1
Insertion	Chr12	21472029	21472031	3
Insertion	Chr2	25932692	25932692	1
Insertion	Chr3	21032633	21032633	1
Insertion	Chr4	12029625	12029625	1
Insertion	Chr5	11218102	11218103	2
Insertion	Chr5	27785035	27785035	1
Insertion	Chr6	22220354	22220354	1
Insertion	Chr6	27094509	27094510	2
Insertion	Chr7	7194400	7194400	1
Insertion	Chr9	12239664	12239684	21

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	5687843	5687981
Inversion	Chr11	13549026	13549229

Translocations: 5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	3480180	Chr4	11078317	LOC_Os04g06600
Translocation	Chr12	4126479	Chr9	5123547	LOC_Os09g08010
Translocation	Chr4	18577003	Chr3	34252811	LOC_Os03g32490
Translocation	Chr3	34696783	Chr2	33958058
Translocation	Chr3	34696998	Chr2	33958051

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