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Mutant Information

Variant Information

Single base substitutions: 40

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	17535829	C-T	HOMO	INTRON
SBS	Chr1	22511530	G-A	HET	INTERGENIC
SBS	Chr1	24144971	A-G	HET	INTERGENIC
SBS	Chr1	31328083	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g54460
SBS	Chr1	33956433	C-G	HET	INTERGENIC
SBS	Chr1	42107512	C-T	HET	INTERGENIC
SBS	Chr2	9511257	C-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g16650
SBS	Chr2	10639058	C-A	HOMO	INTRON
SBS	Chr2	30470771	C-T	HET	INTERGENIC
SBS	Chr2	30817327	A-T	HET	INTERGENIC
SBS	Chr2	32636911	A-T	HET	INTERGENIC
SBS	Chr3	956380	C-T	HET	SYNONYMOUS_CODING
SBS	Chr3	1634416	T-C	HOMO	INTRON
SBS	Chr3	1653532	C-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g03710
SBS	Chr3	9455034	C-G	HOMO	UTR_3_PRIME
SBS	Chr3	13787145	G-A	HET	UTR_3_PRIME
SBS	Chr3	16142843	C-T	HOMO	INTERGENIC
SBS	Chr3	18962227	G-A	HOMO	INTERGENIC
SBS	Chr3	19813059	A-G	HET	INTERGENIC
SBS	Chr3	19961631	C-A	HET	INTERGENIC
SBS	Chr3	35293321	C-T	HET	INTRON
SBS	Chr5	3038282	T-C	HET	INTERGENIC
SBS	Chr5	3817892	T-A	HET	INTRON
SBS	Chr5	10197746	G-A	HET	INTERGENIC
SBS	Chr5	16075576	G-A	HOMO	SYNONYMOUS_CODING
SBS	Chr5	25080659	G-T	HOMO	INTERGENIC
SBS	Chr6	10867562	C-T	HET	SYNONYMOUS_CODING
SBS	Chr6	12469871	C-T	HET	NON_SYNONYMOUS_CODING	LOC_Os06g21610
SBS	Chr6	16037593	G-A	HET	INTERGENIC
SBS	Chr6	16332207	G-A	HET	INTERGENIC
SBS	Chr7	10967038	G-A	HOMO	INTRON
SBS	Chr7	21111650	C-T	HOMO	INTERGENIC
SBS	Chr8	9318713	G-A	HET	INTERGENIC
SBS	Chr8	16486642	T-C	HET	INTERGENIC
SBS	Chr9	11379268	C-T	HET	INTERGENIC
SBS	Chr10	15566200	C-T	HET	SYNONYMOUS_CODING
SBS	Chr11	21852097	T-C	HET	INTERGENIC
SBS	Chr12	13074504	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g23120
SBS	Chr12	21792834	G-C	HET	INTERGENIC
SBS	Chr12	25879052	A-C	HOMO	INTERGENIC

Deletions: 30

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	531104	531105	1
Deletion	Chr10	1572764	1572765	1
Deletion	Chr1	1749614	1749616	2
Deletion	Chr3	3059092	3059101	9
Deletion	Chr7	3462309	3462323	14
Deletion	Chr8	3976001	3991000	15000	2
Deletion	Chr8	4003001	4024000	21000	6
Deletion	Chr8	4028001	4050000	22000	3
Deletion	Chr5	4081461	4081462	1
Deletion	Chr8	4163159	4163161	2
Deletion	Chr7	4242972	4242974	2
Deletion	Chr4	9854056	9854133	77	LOC_Os04g17920
Deletion	Chr2	13894634	13894636	2
Deletion	Chr2	14032541	14032563	22
Deletion	Chr1	15415060	15415061	1
Deletion	Chr4	15537147	15537148	1
Deletion	Chr2	16341287	16341289	2
Deletion	Chr4	16605497	16605498	1
Deletion	Chr7	17111742	17111743	1
Deletion	Chr11	17193001	17208000	15000	3
Deletion	Chr10	17392605	17392628	23
Deletion	Chr8	19997767	19997769	2
Deletion	Chr4	20059535	20059536	1
Deletion	Chr3	21574734	21574735	1
Deletion	Chr1	21933089	21933094	5
Deletion	Chr1	22593585	22593586	1
Deletion	Chr12	25060020	25060021	1
Deletion	Chr4	27274503	27274505	2
Deletion	Chr2	32437292	32437296	4
Deletion	Chr2	34694784	34694790	6

Insertions: 8

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	36481165	36481165	1
Insertion	Chr4	6349361	6349361	1
Insertion	Chr5	12760956	12760956	1
Insertion	Chr5	13988934	13988934	1
Insertion	Chr6	21389882	21389882	1
Insertion	Chr7	23435269	23435271	3
Insertion	Chr8	16899775	16899809	35
Insertion	Chr9	3353018	3353018	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	1270806	1318610	LOC_Os10g03120
Inversion	Chr10	2276142	2276247
Inversion	Chr8	21563824	21563950

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	21275227	Chr1	39382861
Translocation	Chr12	25890388	Chr6	353816

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