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Mutant Information

Variant Information

Single base substitutions: 36

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	18192317	C-A	HOMO	INTRON
SBS	Chr1	18845021	C-T	HOMO	INTERGENIC
SBS	Chr1	38860088	G-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g66910
SBS	Chr1	8224765	T-C	HET	INTERGENIC
SBS	Chr1	9414716	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os01g16580
SBS	Chr10	257609	C-T	HET	INTERGENIC
SBS	Chr11	12727519	G-T	HET	INTRON
SBS	Chr11	13131038	T-G	HET	INTERGENIC
SBS	Chr11	8152456	G-A	HET	INTRON
SBS	Chr12	14259175	C-A	HOMO	NON_SYNONYMOUS_CODING	LOC_Os12g24870
SBS	Chr12	1616012	A-T	HET	INTRON
SBS	Chr12	8980445	C-T	HOMO	INTERGENIC
SBS	Chr2	336414	A-G	HOMO	INTERGENIC
SBS	Chr2	837741	T-A	HOMO	INTERGENIC
SBS	Chr3	21570120	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os03g38840
SBS	Chr3	21830678	C-T	HET	INTRON
SBS	Chr3	25837312	T-C	HET	INTERGENIC
SBS	Chr3	26103093	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g46170
SBS	Chr3	29154654	C-T	HET	INTERGENIC
SBS	Chr3	2922510	C-T	HET	INTRON
SBS	Chr3	31571915	G-A	HET	INTERGENIC
SBS	Chr4	29815324	G-A	HET	INTRON
SBS	Chr5	15218839	C-T	HET	INTRON
SBS	Chr5	15218843	G-T	HET	INTRON
SBS	Chr5	27979829	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os05g48820
SBS	Chr5	29903555	G-A	HET	INTRON
SBS	Chr5	5170589	A-T	HET	INTERGENIC
SBS	Chr6	20188829	T-C	HET	INTERGENIC
SBS	Chr6	20936045	A-G	HET	INTERGENIC
SBS	Chr6	2383059	G-A	HET	INTERGENIC
SBS	Chr7	18385200	T-C	HOMO	SYNONYMOUS_CODING
SBS	Chr7	184007	G-A	HET	INTERGENIC
SBS	Chr7	20689103	A-G	HET	SPLICE_SITE_REGION
SBS	Chr8	19039592	A-T	HOMO	INTERGENIC
SBS	Chr9	12398363	T-C	HOMO	UTR_5_PRIME
SBS	Chr9	2307505	A-G	HOMO	INTERGENIC

Deletions: 25

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	111180	111181	1
Deletion	Chr7	370539	370549	10
Deletion	Chr11	738113	738122	9
Deletion	Chr5	1431760	1431761	1
Deletion	Chr9	2055218	2055219	1
Deletion	Chr3	6037212	6037218	6
Deletion	Chr2	7367001	7380000	13000
Deletion	Chr7	7601329	7601330	1
Deletion	Chr11	7947681	7947688	7
Deletion	Chr7	9727317	9727319	2
Deletion	Chr9	11273397	11273403	6
Deletion	Chr4	11889546	11889547	1
Deletion	Chr9	14005365	14005379	14
Deletion	Chr11	14542477	14542478	1
Deletion	Chr3	20230098	20230099	1
Deletion	Chr4	21221994	21221995	1
Deletion	Chr3	22540594	22540595	1
Deletion	Chr5	22790489	22790490	1	LOC_Os05g38850
Deletion	Chr12	23090899	23090919	20
Deletion	Chr7	23871034	23871041	7
Deletion	Chr11	27170986	27170987	1
Deletion	Chr8	27871057	27871058	1
Deletion	Chr1	30349325	30349326	1
Deletion	Chr4	32893831	32893832	1
Deletion	Chr4	34462528	34462529	1

Insertions: 11

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	42275968	42275968	1
Insertion	Chr10	14091886	14091886	1
Insertion	Chr11	20665326	20665326	1
Insertion	Chr11	25200701	25200701	1
Insertion	Chr11	8578385	8578406	22
Insertion	Chr12	4233833	4233834	2
Insertion	Chr12	9721026	9721026	1
Insertion	Chr2	1504810	1504810	1
Insertion	Chr2	23341540	23341540	1
Insertion	Chr3	16145258	16145259	2
Insertion	Chr5	13597921	13597921	1

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2
Inversion	Chr8	8015595	8015809
Inversion	Chr9	18014348	18014530
Inversion	Chr3	27564363	27564475

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr8	9744461	Chr3	16641765	LOC_Os03g17540
Translocation	Chr6	28880844	Chr2	7385049

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