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Mutant Information

Mutant Name	FN4493-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4493-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 44

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13970714	T-C	HET	INTERGENIC
SBS	Chr1	19029783	T-G	HET	INTERGENIC
SBS	Chr1	1976098	C-T	HOMO	INTRON
SBS	Chr1	38528048	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os01g66340
SBS	Chr10	10668946	G-C	HET	NON_SYNONYMOUS_CODING	LOC_Os10g21070
SBS	Chr10	12447143	C-T	HET	INTERGENIC
SBS	Chr10	1319694	A-C	HET	INTRON
SBS	Chr10	6868072	C-A	HET	INTERGENIC
SBS	Chr10	9278142	T-A	HET	INTERGENIC
SBS	Chr10	9405944	T-G	HET	INTERGENIC
SBS	Chr11	18882866	C-A	HET	INTERGENIC
SBS	Chr11	22011814	T-C	HET	INTERGENIC
SBS	Chr11	27163444	A-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os11g44880
SBS	Chr12	19295343	A-T	HET	INTERGENIC
SBS	Chr12	25701245	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g41490
SBS	Chr12	4162275	A-T	HET	INTERGENIC
SBS	Chr2	18738977	A-G	HOMO	INTERGENIC
SBS	Chr2	20222182	G-T	HET	SYNONYMOUS_CODING
SBS	Chr2	20460689	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os02g34200
SBS	Chr2	20460690	C-A	HET	SYNONYMOUS_CODING
SBS	Chr2	24967731	C-A	HET	INTERGENIC
SBS	Chr2	28466677	C-T	HET	INTRON
SBS	Chr2	34022594	A-G	HET	INTERGENIC
SBS	Chr2	6544284	G-A	HET	INTERGENIC
SBS	Chr3	19451399	C-G	HET	INTERGENIC
SBS	Chr3	19451400	G-T	HET	INTERGENIC
SBS	Chr3	33677307	G-T	HET	INTERGENIC
SBS	Chr3	5862478	A-C	HOMO	INTRON
SBS	Chr3	8719072	A-G	HET	SYNONYMOUS_CODING
SBS	Chr4	13676260	G-T	HET	INTERGENIC
SBS	Chr4	14145340	C-T	HOMO	INTERGENIC
SBS	Chr4	16660052	C-G	HET	INTERGENIC
SBS	Chr4	56602	T-C	HET	INTERGENIC
SBS	Chr5	12642332	C-T	HET	SYNONYMOUS_CODING
SBS	Chr5	15230673	C-G	HET	NON_SYNONYMOUS_CODING	LOC_Os05g26170
SBS	Chr6	22114513	G-A	HET	INTERGENIC
SBS	Chr6	9624022	G-C	HET	INTERGENIC
SBS	Chr7	11752589	T-C	HET	INTERGENIC
SBS	Chr7	14274153	G-A	HET	INTERGENIC
SBS	Chr7	6200828	A-G	HET	INTERGENIC
SBS	Chr9	12160029	T-C	HET	INTRON
SBS	Chr9	14528450	G-A	HET	INTERGENIC
SBS	Chr9	1568902	A-G	HET	SYNONYMOUS_CODING
SBS	Chr9	7059075	T-C	HET	INTERGENIC

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr6	1212397	1212398	1
Deletion	Chr4	2872949	2873059	110
Deletion	Chr5	6613721	6613722	1
Deletion	Chr4	8576407	8576425	18
Deletion	Chr10	9683082	9683129	47
Deletion	Chr11	11380109	11380110	1
Deletion	Chr7	12589643	12589645	2
Deletion	Chr1	14981503	14981504	1
Deletion	Chr7	15404951	15404952	1
Deletion	Chr6	19641970	19641971	1
Deletion	Chr1	20674001	20690000	16000	2
Deletion	Chr12	20807846	20807855	9	LOC_Os12g34330
Deletion	Chr9	20913975	20913988	13
Deletion	Chr10	21672549	21672550	1
Deletion	Chr9	21686911	21686918	7
Deletion	Chr2	23971362	23971439	77	LOC_Os02g39680
Deletion	Chr12	24649406	24649419	13
Deletion	Chr6	29334764	29334774	10
Deletion	Chr3	29621139	29621141	2

Insertions: 21

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	15865031	15865037	7
Insertion	Chr1	35933488	35933488	1
Insertion	Chr10	14117470	14117470	1
Insertion	Chr10	7182540	7182561	22
Insertion	Chr11	20051431	20051431	1
Insertion	Chr11	4998131	4998153	23
Insertion	Chr12	16875312	16875312	1
Insertion	Chr12	21424983	21424983	1
Insertion	Chr12	26562552	26562553	2
Insertion	Chr12	7193352	7193402	51
Insertion	Chr2	33534235	33534235	1
Insertion	Chr2	7367647	7367647	1
Insertion	Chr3	24672230	24672230	1
Insertion	Chr4	13185670	13185676	7
Insertion	Chr4	28446277	28446277	1
Insertion	Chr6	12165190	12165190	1
Insertion	Chr6	12580867	12580922	56
Insertion	Chr6	13774400	13774438	39
Insertion	Chr6	8926633	8926634	2
Insertion	Chr7	7461902	7461902	1
Insertion	Chr9	18068643	18068643	1

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	5805035	5814014	LOC_Os08g10030
Inversion	Chr8	5805048	5814015	LOC_Os08g10030
Inversion	Chr3	11374266	11558763
Inversion	Chr7	13021517	13021568
Inversion	Chr5	21753476	21753906	LOC_Os05g37200

Translocations: 6

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr5	8852674	Chr1	37211317	LOC_Os05g15650
Translocation	Chr3	11611320	Chr1	42094216
Translocation	Chr6	12360285	Chr3	11611056
Translocation	Chr6	12360502	Chr1	40966577
Translocation	Chr7	12785163	Chr6	12360301
Translocation	Chr7	12785164	Chr6	12360502

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