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| Mutant Information |
|---|
| Mutant Name | FN4501-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4501-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 39
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 11181496 | G-A | HET | ||
| SBS | Chr1 | 30939227 | G-A | HET | ||
| SBS | Chr1 | 37709600 | G-A | HET | ||
| SBS | Chr1 | 7029675 | G-A | HET | ||
| SBS | Chr10 | 15527846 | C-A | HET | ||
| SBS | Chr10 | 19911926 | G-T | HET | LOC_Os10g37210 | |
| SBS | Chr10 | 19911927 | A-T | HET | ||
| SBS | Chr10 | 23018535 | A-G | HET | ||
| SBS | Chr10 | 2581078 | T-C | HET | ||
| SBS | Chr10 | 3176816 | C-T | HOMO | ||
| SBS | Chr11 | 20050670 | G-A | HOMO | ||
| SBS | Chr11 | 6043188 | T-C | HET | ||
| SBS | Chr12 | 14193324 | G-A | HOMO | ||
| SBS | Chr12 | 6793040 | C-T | HET | ||
| SBS | Chr2 | 34891587 | C-A | HET | ||
| SBS | Chr2 | 35690625 | C-T | HET | ||
| SBS | Chr3 | 18758419 | C-T | HET | ||
| SBS | Chr3 | 20806015 | T-A | HOMO | LOC_Os03g37500 | |
| SBS | Chr3 | 20806016 | T-A | HOMO | LOC_Os03g37500 | |
| SBS | Chr4 | 12977101 | A-T | HOMO | ||
| SBS | Chr4 | 16670735 | C-T | HET | ||
| SBS | Chr5 | 15849704 | A-T | HET | ||
| SBS | Chr5 | 16563100 | T-A | HET | ||
| SBS | Chr5 | 16712663 | A-G | HET | ||
| SBS | Chr5 | 6602034 | A-C | HET | ||
| SBS | Chr6 | 15557210 | C-T | HOMO | ||
| SBS | Chr6 | 17715265 | A-T | HOMO | ||
| SBS | Chr6 | 9733572 | G-T | HET | ||
| SBS | Chr7 | 12632332 | G-A | HET | ||
| SBS | Chr7 | 18683498 | G-A | HET | ||
| SBS | Chr7 | 24216607 | G-A | HOMO | LOC_Os07g40390 | |
| SBS | Chr7 | 8225607 | A-T | HET | LOC_Os07g14410 | |
| SBS | Chr8 | 15478232 | T-A | HET | ||
| SBS | Chr8 | 17404983 | G-C | HOMO | ||
| SBS | Chr8 | 25215576 | G-A | HET | ||
| SBS | Chr8 | 8798176 | C-T | HET | ||
| SBS | Chr9 | 10122563 | C-T | HET | ||
| SBS | Chr9 | 14678535 | C-T | HOMO | ||
| SBS | Chr9 | 7310616 | A-T | HET |
Deletions: 21
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr12 | 2527887 | 2527895 | 9 | LOC_Os12g05520 |
| Deletion | Chr5 | 8349652 | 8349661 | 10 | |
| Deletion | Chr11 | 10509463 | 10509466 | 4 | |
| Deletion | Chr11 | 10734865 | 10734875 | 11 | |
| Deletion | Chr5 | 11220230 | 11220230 | 1 | |
| Deletion | Chr7 | 11721514 | 11721515 | 2 | |
| Deletion | Chr4 | 12009654 | 12009657 | 4 | LOC_Os04g21290 |
| Deletion | Chr3 | 12082284 | 12082294 | 11 | LOC_Os03g21180 |
| Deletion | Chr9 | 13111314 | 13111315 | 2 | |
| Deletion | Chr12 | 13782920 | 13782941 | 22 | |
| Deletion | Chr10 | 14388969 | 14388969 | 1 | |
| Deletion | Chr12 | 16443505 | 16443506 | 2 | |
| Deletion | Chr10 | 17174335 | 17174335 | 1 | |
| Deletion | Chr1 | 18805209 | 18805267 | 59 | |
| Deletion | Chr4 | 18948933 | 18948937 | 5 | LOC_Os04g31630 |
| Deletion | Chr3 | 20887396 | 20887410 | 15 | |
| Deletion | Chr8 | 21007145 | 21007180 | 36 | |
| Deletion | Chr11 | 24410976 | 24410999 | 24 | |
| Deletion | Chr4 | 24446606 | 24446606 | 1 | |
| Deletion | Chr3 | 26156726 | 26156726 | 1 | |
| Deletion | Chr3 | 27539695 | 27539697 | 3 |
Insertions: 11
Inversions: 1
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr2 | 6158991 | 6159177 |
Translocations: 6
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr8 | 12191297 | Chr2 | 5893981 | |
| Translocation | Chr12 | 13029484 | Chr1 | 22308692 | |
| Translocation | Chr8 | 22648064 | Chr3 | 26172698 | LOC_Os03g46270 |
| Translocation | Chr8 | 22657686 | Chr3 | 26172696 | 2 |
| Translocation | Chr8 | 24109940 | Chr1 | 39619953 | LOC_Os01g68160 |
| Translocation | Chr8 | 24110237 | Chr1 | 39619942 | LOC_Os01g68160 |