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Mutant Information

Variant Information

Single base substitutions: 36

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11151066	T-C	HOMO	SYNONYMOUS_CODING
SBS	Chr1	22367559	T-A	HOMO	SYNONYMOUS_CODING
SBS	Chr1	35928555	G-A	HOMO	INTRON
SBS	Chr1	36704508	C-T	HET	INTRON
SBS	Chr1	36910778	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os01g63640
SBS	Chr1	39401050	G-T	HOMO	INTERGENIC
SBS	Chr11	3685285	C-T	HET	INTERGENIC
SBS	Chr11	6083727	G-A	HOMO	INTERGENIC
SBS	Chr12	1375704	A-C	HOMO	INTERGENIC
SBS	Chr2	10349716	G-T	HET	INTERGENIC
SBS	Chr2	10349717	G-A	HET	INTERGENIC
SBS	Chr3	14215063	G-T	HET	INTRON
SBS	Chr3	14215064	A-T	HET	INTRON
SBS	Chr3	15737573	C-T	HET	INTERGENIC
SBS	Chr3	20791654	G-A	HET	INTERGENIC
SBS	Chr3	7931377	C-A	HOMO	INTRON
SBS	Chr4	12273974	T-A	HET	SYNONYMOUS_CODING
SBS	Chr4	13103088	C-T	HET	INTERGENIC
SBS	Chr4	2602025	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os04g05210
SBS	Chr4	26340895	C-T	HOMO	INTERGENIC
SBS	Chr4	35214568	G-T	HOMO	INTERGENIC
SBS	Chr5	1030175	A-G	HET	INTERGENIC
SBS	Chr5	21701026	A-G	HOMO	UTR_3_PRIME
SBS	Chr5	29551958	G-A	HET	INTERGENIC
SBS	Chr5	6001172	T-A	HET	INTERGENIC
SBS	Chr6	10591957	C-T	HET	INTERGENIC
SBS	Chr6	13542075	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os06g23190
SBS	Chr6	13542076	T-G	HET	NON_SYNONYMOUS_CODING	LOC_Os06g23190
SBS	Chr6	20524378	C-A	HET	STOP_GAINED	LOC_Os06g35200
SBS	Chr6	8920554	A-T	HET	INTERGENIC
SBS	Chr7	9016243	C-T	HET	INTERGENIC
SBS	Chr8	13808603	C-T	HOMO	INTRON
SBS	Chr8	18291393	C-T	HOMO	INTERGENIC
SBS	Chr8	18452807	C-A	HOMO	UTR_5_PRIME
SBS	Chr8	20116999	C-T	HET	INTERGENIC
SBS	Chr9	8186761	C-T	HET	INTERGENIC

Deletions: 24

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr12	961836	961849	13
Deletion	Chr11	1663830	1663834	4
Deletion	Chr11	2085565	2085566	1
Deletion	Chr3	2949877	2949885	8	LOC_Os03g05880
Deletion	Chr3	3694205	3694231	26	LOC_Os03g07220
Deletion	Chr3	7857254	7857266	12
Deletion	Chr7	9702884	9702885	1	LOC_Os07g16540
Deletion	Chr3	10581325	10581352	27
Deletion	Chr10	12004354	12004355	1
Deletion	Chr7	15348016	15348019	3
Deletion	Chr3	15845528	15845532	4
Deletion	Chr9	17458779	17458794	15
Deletion	Chr9	19989643	19989644	1
Deletion	Chr4	20738020	20738138	118
Deletion	Chr8	21592781	21592793	12
Deletion	Chr6	22110333	22110350	17	LOC_Os06g37400
Deletion	Chr9	22675836	22675844	8
Deletion	Chr5	23815405	23815407	2
Deletion	Chr1	25367064	25367073	9	LOC_Os01g44230
Deletion	Chr8	26497925	26498413	488
Deletion	Chr6	27762748	27762755	7
Deletion	Chr11	28522961	28522965	4	LOC_Os11g47420
Deletion	Chr2	29529411	29529465	54
Deletion	Chr2	33167790	33167831	41

Insertions: 1

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	22223380	22223383	4

Inversions: 3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	463366	1368675
Inversion	Chr10	3191223	3449768	LOC_Os10g06640
Inversion	Chr1	38819618	40236748	2

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	12895647	Chr4	29635117
Translocation	Chr8	19315827	Chr4	6100392	LOC_Os08g31240

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