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Mutant Information |
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Mutant Name | FN4515-S [Download] |
Generation | M2 |
Genus Species | Oryza Sativa |
Cultivar | Kitaake |
Alignment File (BAM File) | Download FN4515-S Alignment File |
Seed Availability | Yes [Order Seeds] |
Mapping (Hover to Zoom-In) |
Variant Information |
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Single base substitutions: 32
Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
---|---|---|---|---|---|---|
SBS | Chr1 | 22114108 | A-G | HOMO | ||
SBS | Chr1 | 28692481 | G-A | HOMO | LOC_Os01g49940 | |
SBS | Chr1 | 41827538 | G-A | HOMO | ||
SBS | Chr2 | 8122980 | T-A | HET | ||
SBS | Chr2 | 24930710 | A-G | HET | ||
SBS | Chr2 | 28981270 | A-C | HET | ||
SBS | Chr2 | 29910372 | A-T | HET | ||
SBS | Chr3 | 945587 | A-G | HET | ||
SBS | Chr3 | 1981208 | T-C | HET | ||
SBS | Chr3 | 6437428 | C-A | HET | ||
SBS | Chr3 | 6568669 | G-A | HET | ||
SBS | Chr4 | 4904537 | T-A | HET | ||
SBS | Chr4 | 5213261 | C-T | HET | LOC_Os04g09720 | |
SBS | Chr4 | 10173730 | G-C | HET | ||
SBS | Chr4 | 23076089 | C-T | HET | ||
SBS | Chr5 | 12144390 | A-G | HET | ||
SBS | Chr6 | 17186426 | G-A | HET | ||
SBS | Chr7 | 6537287 | A-T | HET | ||
SBS | Chr8 | 2855685 | G-A | HOMO | ||
SBS | Chr8 | 13639600 | C-T | HET | ||
SBS | Chr8 | 23215351 | G-A | HOMO | ||
SBS | Chr8 | 24355786 | G-A | HET | ||
SBS | Chr10 | 15115441 | G-A | HET | ||
SBS | Chr10 | 16793188 | T-C | HET | ||
SBS | Chr11 | 3297545 | C-A | HET | ||
SBS | Chr11 | 5832180 | C-T | HOMO | ||
SBS | Chr11 | 14318408 | C-G | HOMO | ||
SBS | Chr11 | 26827146 | A-G | HET | ||
SBS | Chr12 | 5015044 | C-T | HET | ||
SBS | Chr12 | 9107533 | G-C | HET | ||
SBS | Chr12 | 12279604 | C-A | HET | ||
SBS | Chr12 | 16894565 | C-A | HOMO |
Deletions: 32
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Deletion | Chr3 | 697330 | 697337 | 8 | |
Deletion | Chr11 | 3678948 | 3678959 | 12 | |
Deletion | Chr5 | 3880701 | 3880712 | 12 | LOC_Os05g07300 |
Deletion | Chr6 | 4737173 | 4737178 | 6 | |
Deletion | Chr11 | 4952061 | 4952061 | 1 | LOC_Os11g09240 |
Deletion | Chr1 | 5338912 | 5338912 | 1 | |
Deletion | Chr10 | 6446579 | 6446581 | 3 | |
Deletion | Chr9 | 7767683 | 7767683 | 1 | |
Deletion | Chr1 | 9295718 | 9295718 | 1 | |
Deletion | Chr1 | 10037162 | 10037165 | 4 | LOC_Os01g17460 |
Deletion | Chr6 | 10246262 | 10246262 | 1 | |
Deletion | Chr1 | 10309746 | 10309755 | 10 | |
Deletion | Chr3 | 10503692 | 10503693 | 2 | |
Deletion | Chr8 | 11225225 | 11225225 | 1 | LOC_Os08g18820 |
Deletion | Chr8 | 14911288 | 14911288 | 1 | |
Deletion | Chr8 | 14937582 | 14937594 | 13 | |
Deletion | Chr10 | 15197053 | 15197054 | 2 | |
Deletion | Chr11 | 15232257 | 15232257 | 1 | |
Deletion | Chr9 | 15373314 | 15373314 | 1 | |
Deletion | Chr11 | 16556391 | 16556391 | 1 | |
Deletion | Chr8 | 17059442 | 17059442 | 1 | |
Deletion | Chr5 | 17139862 | 17139884 | 23 | |
Deletion | Chr7 | 18123415 | 18123475 | 61 | |
Deletion | Chr5 | 21463352 | 21463352 | 1 | |
Deletion | Chr11 | 22109717 | 22109733 | 17 | LOC_Os11g37440 |
Deletion | Chr12 | 23527325 | 23527326 | 2 | |
Deletion | Chr7 | 24822303 | 24822303 | 1 | LOC_Os07g41430 |
Deletion | Chr6 | 25241539 | 25241539 | 1 | |
Deletion | Chr8 | 26494982 | 26494983 | 2 | |
Deletion | Chr5 | 29396274 | 29396282 | 9 | LOC_Os05g51250 |
Deletion | Chr1 | 30471740 | 30471741 | 2 | |
Deletion | Chr1 | 37089952 | 37089976 | 25 |
Insertions: 22
Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
---|---|---|---|---|---|
Insertion | Chr2 | 1504810 | 1504810 | 1 | |
Insertion | Chr2 | 24257652 | 24257696 | 45 | |
Insertion | Chr2 | 25801330 | 25801330 | 1 | |
Insertion | Chr3 | 7297967 | 7297968 | 2 | |
Insertion | Chr3 | 8390821 | 8390866 | 46 | |
Insertion | Chr3 | 25262548 | 25262636 | 89 | |
Insertion | Chr4 | 1183339 | 1183344 | 6 | |
Insertion | Chr5 | 11831050 | 11831050 | 1 | |
Insertion | Chr6 | 22465517 | 22465517 | 1 | |
Insertion | Chr7 | 14023100 | 14023100 | 1 | |
Insertion | Chr8 | 3980916 | 3980917 | 2 | |
Insertion | Chr8 | 15173011 | 15173011 | 1 | |
Insertion | Chr9 | 7803180 | 7803218 | 39 | |
Insertion | Chr10 | 2002328 | 2002331 | 4 | |
Insertion | Chr11 | 24516968 | 24516970 | 3 | |
Insertion | Chr12 | 9917787 | 9917859 | 73 | |
Insertion | Chr12 | 26967991 | 26967992 | 2 | |
Insertion | Chr3 | 543233 | 543233 | 1 | |
Insertion | Chr3 | 17298092 | 17298092 | 1 | |
Insertion | Chr4 | 27492926 | 27492926 | 1 | |
Insertion | Chr5 | 14121293 | 14121293 | 1 | |
Insertion | Chr8 | 25592893 | 25592896 | 4 | LOC_Os08g40440 |
Inversions: 5
Translocations: 2
Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
---|---|---|---|---|---|
Translocation | Chr5 | 17483801 | Chr1 | 30296718 | |
Translocation | Chr5 | 17490733 | Chr1 | 30296431 | LOC_Os01g52690 |