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Mutant Information

Mutant Name	FN4526-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN4526-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 21

Variant Type	Chromosome	Position	Change	Genotype	Gene Affected
SBS	Chr1	14260443	C-A	HET
SBS	Chr1	20565368	C-A	HET
SBS	Chr1	32866786	T-A	HET
SBS	Chr1	4253064	T-C	HOMO
SBS	Chr1	7235852	G-A	HOMO
SBS	Chr12	12841534	G-A	HET	LOC_Os12g22750
SBS	Chr2	15232581	T-A	HET
SBS	Chr3	9104770	A-G	HOMO
SBS	Chr4	12808018	T-G	HET
SBS	Chr4	3414941	C-T	HET
SBS	Chr5	12804950	G-A	HOMO
SBS	Chr5	17558753	A-T	HET
SBS	Chr5	19027602	A-T	HET
SBS	Chr5	19802366	T-A	HET
SBS	Chr6	27004149	C-T	HET
SBS	Chr7	18338993	G-T	HET
SBS	Chr7	19958857	C-G	HET
SBS	Chr7	26045962	C-A	HET	LOC_Os07g43540
SBS	Chr7	8448597	G-A	HET	LOC_Os07g14800
SBS	Chr7	8563563	A-G	HOMO
SBS	Chr9	3997712	C-T	HET	LOC_Os09g07860

Deletions: 52

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr9	119365	119365	1
Deletion	Chr2	2525857	2525857	1
Deletion	Chr8	2705817	2705833	17	LOC_Os08g05180
Deletion	Chr7	2732147	2732147	1
Deletion	Chr5	3946470	3946470	1
Deletion	Chr2	4365317	4365322	6
Deletion	Chr10	4483421	4483424	4
Deletion	Chr5	4631628	4631628	1
Deletion	Chr3	6115055	6115058	4
Deletion	Chr7	6209039	6209039	1
Deletion	Chr5	6481208	6481208	1
Deletion	Chr9	6883903	6883926	24
Deletion	Chr10	7079894	7079894	1
Deletion	Chr7	7454269	7454284	16
Deletion	Chr3	7765200	7765200	1
Deletion	Chr7	8364131	8364131	1
Deletion	Chr7	8452729	8452729	1	LOC_Os07g14800
Deletion	Chr10	8737002	8737002	1
Deletion	Chr5	8739318	8739318	1
Deletion	Chr3	8889553	8889570	18
Deletion	Chr8	8951055	8951055	1	LOC_Os08g14850
Deletion	Chr2	9175811	9175857	47
Deletion	Chr10	10285899	10285918	20
Deletion	Chr1	10577382	10577382	1
Deletion	Chr6	11357454	11357455	2
Deletion	Chr5	11455459	11455460	2
Deletion	Chr11	12039799	12039801	3
Deletion	Chr12	12046496	12046496	1
Deletion	Chr11	12154252	12154254	3
Deletion	Chr5	12974311	12974312	2
Deletion	Chr6	13377252	13377252	1
Deletion	Chr2	13748839	13748839	1
Deletion	Chr8	14144239	14144240	2	LOC_Os08g23400
Deletion	Chr4	14419233	14419238	6
Deletion	Chr12	14476001	14508000	32000	4
Deletion	Chr5	15377473	15377473	1
Deletion	Chr6	15480091	15480246	156
Deletion	Chr6	15480128	15480128	1
Deletion	Chr3	15988326	15988327	2
Deletion	Chr1	16366898	16366898	1
Deletion	Chr8	16442995	16443043	49
Deletion	Chr3	17761966	17761968	3	LOC_Os03g31190
Deletion	Chr4	18509966	18509966	1
Deletion	Chr8	18927686	18927700	15
Deletion	Chr7	20112001	20173000	61000	8
Deletion	Chr2	20743406	20743406	1
Deletion	Chr10	20886571	20886571	1	LOC_Os10g39140
Deletion	Chr8	23102638	23102638	1	LOC_Os08g36620
Deletion	Chr2	35168041	35168044	4
Deletion	Chr3	36011661	36011661	1
Deletion	Chr3	36068408	36068408	1
Deletion	Chr1	38869536	38869555	20

Insertions: 39

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	12843601	12843602	2
Insertion	Chr10	14393158	14393251	94
Insertion	Chr10	19263948	19263948	1
Insertion	Chr10	20171818	20171818	1
Insertion	Chr10	4532757	4532800	44
Insertion	Chr11	11800141	11800141	1
Insertion	Chr11	15086536	15086536	1
Insertion	Chr11	16815440	16815442	3
Insertion	Chr11	26790765	26790765	1
Insertion	Chr11	4930490	4930595	106
Insertion	Chr12	15745199	15745199	1
Insertion	Chr12	8511612	8511613	2
Insertion	Chr2	13961850	13961850	1
Insertion	Chr2	14203730	14203730	1
Insertion	Chr3	13514048	13514048	1
Insertion	Chr3	23080249	23080249	1	LOC_Os03g41480
Insertion	Chr3	30434909	30434910	2
Insertion	Chr3	5879150	5879150	1
Insertion	Chr4	11225828	11225828	1
Insertion	Chr4	12016079	12016079	1
Insertion	Chr4	12265757	12265757	1
Insertion	Chr4	31824591	31824591	1
Insertion	Chr4	7471318	7471318	1
Insertion	Chr5	17136044	17136096	53
Insertion	Chr5	18211436	18211438	3	LOC_Os05g31330
Insertion	Chr5	6309963	6309963	1
Insertion	Chr6	28382298	28382398	101	LOC_Os06g46720
Insertion	Chr7	25047864	25047907	44
Insertion	Chr7	5804277	5804277	1
Insertion	Chr7	6072669	6072670	2
Insertion	Chr7	6528183	6528183	1
Insertion	Chr7	9057510	9057513	4	LOC_Os07g15620
Insertion	Chr8	12578644	12578644	1
Insertion	Chr8	15705065	15705065	1
Insertion	Chr8	15898998	15898998	1
Insertion	Chr8	2493199	2493200	2
Insertion	Chr8	7114679	7114679	1
Insertion	Chr9	3293388	3293388	1
Insertion	Chr9	55258	55258	1

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2
Inversion	Chr2	3859128	3859251
Inversion	Chr9	3883269	3883454
Inversion	Chr9	9253416	9253625
Inversion	Chr12	13693474	14344806
Inversion	Chr12	13695377	14344810
Inversion	Chr2	27196973	27197220

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	13693486	Chr9	20736472
Translocation	Chr12	13693619	Chr9	20736485

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