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Mutant Information

Variant Information

Single base substitutions: 34

Variant Type	Chromosome	Position	Change	Genotype	Gene Affected
SBS	Chr1	19213194	G-A	HET	LOC_Os01g34800
SBS	Chr10	11482951	C-T	HET
SBS	Chr10	18476374	C-T	HET
SBS	Chr10	3257545	T-A	HET	LOC_Os10g06320
SBS	Chr10	5218310	T-A	HOMO
SBS	Chr10	5778583	A-G	HET
SBS	Chr10	6188506	G-A	HOMO
SBS	Chr11	13295223	G-T	HET
SBS	Chr11	17120770	T-A	HET	LOC_Os11g29510
SBS	Chr11	17887769	A-G	HET
SBS	Chr11	4022854	C-T	HET
SBS	Chr11	7014613	C-A	HET
SBS	Chr11	9433932	G-T	HET
SBS	Chr12	18201827	T-C	HET
SBS	Chr12	24989439	T-C	HET
SBS	Chr12	4966969	G-A	HET
SBS	Chr12	8529528	A-T	HET
SBS	Chr12	9831259	T-C	HET
SBS	Chr2	31263866	C-G	HET
SBS	Chr3	22217946	G-T	HET	LOC_Os03g40000
SBS	Chr3	26712141	C-A	HET
SBS	Chr3	5568776	G-A	HOMO
SBS	Chr4	23444737	C-G	HOMO
SBS	Chr4	28495916	A-G	HET
SBS	Chr4	32720678	G-T	HET
SBS	Chr5	15495404	G-A	HOMO
SBS	Chr5	21314718	C-T	HET
SBS	Chr5	25063369	T-C	HOMO
SBS	Chr5	5708496	G-C	HET
SBS	Chr6	24587971	G-A	HET
SBS	Chr6	29856890	T-C	HOMO	LOC_Os06g49270
SBS	Chr7	6364409	T-C	HET
SBS	Chr9	11341172	C-T	HET	LOC_Os09g18500
SBS	Chr9	16010524	C-A	HET	LOC_Os09g26490

Deletions: 26

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr10	1052019	1052019	1
Deletion	Chr8	2448870	2448879	10
Deletion	Chr3	3950975	3950975	1
Deletion	Chr5	4189223	4189223	1
Deletion	Chr10	8116296	8116365	70
Deletion	Chr6	8484975	8485064	90	LOC_Os06g14950
Deletion	Chr4	9573451	9573451	1
Deletion	Chr10	11456298	11456358	61
Deletion	Chr11	11939817	11939818	2
Deletion	Chr11	12110448	12110450	3
Deletion	Chr7	14127450	14127450	1
Deletion	Chr8	14458797	14458801	5
Deletion	Chr8	16037084	16037085	2
Deletion	Chr3	16704058	16704058	1
Deletion	Chr8	18389275	18389281	7	LOC_Os08g29930
Deletion	Chr9	18602037	18602049	13
Deletion	Chr3	18954854	18954856	3	LOC_Os03g33130
Deletion	Chr3	19316056	19316058	3	LOC_Os03g33790
Deletion	Chr1	19966939	19966939	1
Deletion	Chr5	21934829	21934839	11	LOC_Os05g37480
Deletion	Chr3	23173015	23173017	3
Deletion	Chr2	24251917	24251922	6
Deletion	Chr11	26414755	26414755	1
Deletion	Chr1	27352878	27352888	11
Deletion	Chr5	27962440	27962440	1
Deletion	Chr6	29389750	29389750	1

Insertions: 15

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	27352713	27352713	1
Insertion	Chr10	5091446	5091446	1	LOC_Os10g09440
Insertion	Chr11	4273316	4273322	7
Insertion	Chr12	14809319	14809319	1
Insertion	Chr12	14933085	14933102	18
Insertion	Chr2	23309205	23309205	1
Insertion	Chr2	27287986	27287986	1
Insertion	Chr2	5705371	5705379	9
Insertion	Chr5	8546992	8547000	9
Insertion	Chr6	12551051	12551051	1
Insertion	Chr7	10154664	10154664	1
Insertion	Chr7	18864172	18864248	77
Insertion	Chr8	8078883	8078883	1	LOC_Os08g13590
Insertion	Chr9	4080964	4080964	1
Insertion	Chr9	4714380	4714380	1

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2
Inversion	Chr12	1301468	1301625
Inversion	Chr1	12172052	12172207
Inversion	Chr10	19205346	19231392
Inversion	Chr10	19205376	19231392

Translocations: 1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	19600446	Chr5	24548258

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