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Mutant Information

Variant Information

Single base substitutions: 54

Variant Type	Chromosome	Position	Change	Genotype	Gene Affected
SBS	Chr1	12513187	G-A	HOMO
SBS	Chr1	14978694	T-C	HET
SBS	Chr1	21428496	C-G	HOMO
SBS	Chr1	34437924	C-T	HET
SBS	Chr1	36587342	C-T	HET
SBS	Chr1	7124718	T-A	HET
SBS	Chr10	11548680	G-A	HET	LOC_Os10g22340
SBS	Chr11	21317837	T-C	HOMO
SBS	Chr12	11196580	T-A	HOMO
SBS	Chr12	11558934	T-A	HET	LOC_Os12g19810
SBS	Chr12	12480421	T-C	HET
SBS	Chr12	12639645	C-T	HOMO
SBS	Chr12	14763429	G-T	HET
SBS	Chr12	23414331	A-T	HET
SBS	Chr12	24209673	C-T	HET
SBS	Chr2	17926549	A-T	HET
SBS	Chr2	18014838	T-C	HET
SBS	Chr2	19548077	T-C	HET
SBS	Chr2	30853872	G-A	HOMO
SBS	Chr2	9619182	T-A	HET
SBS	Chr3	10333040	C-A	HET
SBS	Chr3	2081187	G-T	HOMO
SBS	Chr3	21779910	A-G	HET
SBS	Chr3	22748306	T-C	HET
SBS	Chr3	32639273	C-T	HET
SBS	Chr4	10168300	T-G	HET
SBS	Chr4	10753898	G-A	HET	LOC_Os04g19330
SBS	Chr4	10880931	G-A	HET
SBS	Chr4	24589695	C-T	HET
SBS	Chr4	27712770	G-C	HET
SBS	Chr4	3113788	A-G	HET
SBS	Chr4	33090681	G-T	HET
SBS	Chr4	5192761	T-A	HET
SBS	Chr5	15305393	G-A	HOMO
SBS	Chr5	22029609	A-T	HOMO	LOC_Os05g37640
SBS	Chr5	24772742	T-C	HET
SBS	Chr5	3389125	C-T	HET
SBS	Chr6	15251095	C-T	HET
SBS	Chr6	17638682	C-T	HET
SBS	Chr6	21883021	C-A	HET
SBS	Chr6	28514771	G-A	HET
SBS	Chr6	30108411	G-T	HET
SBS	Chr7	17622848	G-C	HET
SBS	Chr7	21475367	A-G	HOMO
SBS	Chr7	28872022	G-A	HET
SBS	Chr7	4336724	G-C	HET
SBS	Chr7	9843828	C-T	HET	LOC_Os07g16770
SBS	Chr8	18151300	G-T	HET
SBS	Chr8	20772386	A-T	HOMO
SBS	Chr8	24889981	C-G	HET
SBS	Chr8	2670285	T-A	HOMO	LOC_Os08g05150
SBS	Chr9	11578720	T-C	HOMO	LOC_Os09g19350
SBS	Chr9	14341397	G-A	HET
SBS	Chr9	4366849	G-A	HOMO

Deletions: 35

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr2	1243843	1243843	1
Deletion	Chr12	2049860	2049860	1
Deletion	Chr1	2646001	2675000	29000	8
Deletion	Chr12	3723035	3723035	1
Deletion	Chr7	5041440	5041440	1
Deletion	Chr1	5341491	5341491	1
Deletion	Chr9	5451168	5451170	3
Deletion	Chr5	5538904	5538905	2
Deletion	Chr6	6122990	6122996	7	LOC_Os06g11550
Deletion	Chr2	6894596	6894596	1	LOC_Os02g13010
Deletion	Chr2	7398665	7398665	1
Deletion	Chr12	10293028	10293028	1
Deletion	Chr4	11233766	11233767	2
Deletion	Chr4	11377001	11422000	45000	10
Deletion	Chr2	11823998	11824010	13
Deletion	Chr7	12507001	12564000	57000	8
Deletion	Chr12	13441978	13441979	2
Deletion	Chr3	13484351	13484351	1
Deletion	Chr1	15889001	15899000	10000	LOC_Os01g28370
Deletion	Chr1	16135001	16269000	134000	24
Deletion	Chr1	16274001	16309000	35000	6
Deletion	Chr1	16312001	16555000	243000	33
Deletion	Chr11	16494988	16494990	3
Deletion	Chr11	16518111	16518111	1
Deletion	Chr1	16787296	16787296	1
Deletion	Chr7	17153914	17153915	2
Deletion	Chr9	17991083	17991083	1
Deletion	Chr9	18587942	18587942	1
Deletion	Chr5	21307788	21307794	7
Deletion	Chr2	21696318	21696318	1
Deletion	Chr5	22344879	22344884	6
Deletion	Chr8	25139768	25139768	1	LOC_Os08g39710
Deletion	Chr4	27274503	27274514	12
Deletion	Chr4	31706754	31706756	3
Deletion	Chr2	35122004	35122004	1

Insertions: 20

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	10179066	10179157	92
Insertion	Chr10	21082481	21082531	51	LOC_Os10g39480
Insertion	Chr10	21689157	21689158	2
Insertion	Chr11	13435197	13435238	42
Insertion	Chr12	7112357	7112385	29
Insertion	Chr3	1056609	1056610	2
Insertion	Chr3	14225598	14225599	2
Insertion	Chr3	34863825	34863825	1
Insertion	Chr4	21773632	21773632	1
Insertion	Chr5	10007414	10007414	1
Insertion	Chr5	1027174	1027177	4
Insertion	Chr5	15788763	15788879	117
Insertion	Chr5	25552582	25552582	1
Insertion	Chr6	11423230	11423231	2
Insertion	Chr8	14911622	14911628	7
Insertion	Chr8	17952539	17952544	6
Insertion	Chr9	1133649	1133746	98
Insertion	Chr9	16279523	16279523	1
Insertion	Chr9	5579140	5579184	45	LOC_Os09g10240
Insertion	Chr9	8846950	8846991	42

Inversions: 5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	15178128	15888315
Inversion	Chr1	15899369	16560598
Inversion	Chr1	15948857	16135399	LOC_Os01g28474
Inversion	Chr6	18123431	18900965
Inversion	Chr1	40156043	40156273

Translocations: 3

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	18488140	Chr11	18175803
Translocation	Chr9	21823899	Chr1	2675361	2
Translocation	Chr11	27652627	Chr7	15855915	LOC_Os11g45710

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