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| Mutant Information |
|---|
| Mutant Name | FN4536-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4536-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 35
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 11202167 | T-A | HOMO | ||
| SBS | Chr1 | 11202168 | T-G | HOMO | ||
| SBS | Chr1 | 19203296 | C-T | HOMO | ||
| SBS | Chr10 | 18583919 | T-C | HET | ||
| SBS | Chr10 | 2304434 | T-C | HOMO | ||
| SBS | Chr10 | 9764363 | G-A | HOMO | ||
| SBS | Chr11 | 16334075 | C-A | HOMO | ||
| SBS | Chr11 | 16493860 | C-A | HOMO | ||
| SBS | Chr11 | 17524827 | T-C | HOMO | ||
| SBS | Chr11 | 24739576 | C-A | HET | ||
| SBS | Chr12 | 13626892 | G-C | HOMO | LOC_Os12g23980 | |
| SBS | Chr12 | 15400549 | C-T | HET | ||
| SBS | Chr12 | 18338449 | T-C | HET | LOC_Os12g30540 | |
| SBS | Chr12 | 25535116 | G-A | HET | ||
| SBS | Chr12 | 25535119 | G-A | HET | ||
| SBS | Chr12 | 25827194 | T-G | HET | ||
| SBS | Chr2 | 17750036 | G-A | HET | ||
| SBS | Chr2 | 20526845 | G-T | HET | LOC_Os02g34300 | |
| SBS | Chr2 | 4314257 | C-T | HOMO | ||
| SBS | Chr3 | 16217171 | G-A | HET | ||
| SBS | Chr3 | 1680892 | T-C | HOMO | ||
| SBS | Chr3 | 1680902 | T-C | HOMO | ||
| SBS | Chr3 | 17492837 | G-A | HET | ||
| SBS | Chr4 | 21614072 | T-C | HET | ||
| SBS | Chr4 | 23279762 | G-A | HOMO | ||
| SBS | Chr4 | 27876437 | C-T | HOMO | ||
| SBS | Chr4 | 5321588 | G-C | HOMO | ||
| SBS | Chr5 | 21584790 | C-A | HET | ||
| SBS | Chr5 | 21802650 | A-T | HOMO | ||
| SBS | Chr5 | 5046991 | C-T | HET | ||
| SBS | Chr5 | 6546817 | T-C | HET | ||
| SBS | Chr6 | 17023404 | C-T | HET | ||
| SBS | Chr8 | 21294955 | G-A | HET | ||
| SBS | Chr9 | 11178198 | G-T | HET | LOC_Os09g18230 | |
| SBS | Chr9 | 18357739 | T-A | HET |
Deletions: 19
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr4 | 545929 | 545932 | 4 | LOC_Os04g01874 |
| Deletion | Chr2 | 2048721 | 2048721 | 1 | |
| Deletion | Chr3 | 3366579 | 3366593 | 15 | |
| Deletion | Chr10 | 4430060 | 4430060 | 1 | |
| Deletion | Chr3 | 4824827 | 4824830 | 4 | |
| Deletion | Chr12 | 12149723 | 12149729 | 7 | LOC_Os12g21624 |
| Deletion | Chr12 | 12151295 | 12151295 | 1 | LOC_Os12g21624 |
| Deletion | Chr8 | 12156104 | 12156104 | 1 | LOC_Os08g20250 |
| Deletion | Chr9 | 14504962 | 14504966 | 5 | |
| Deletion | Chr6 | 15550809 | 15550810 | 2 | |
| Deletion | Chr11 | 16832001 | 16884000 | 52000 | 6 |
| Deletion | Chr3 | 17151711 | 17151755 | 45 | |
| Deletion | Chr6 | 18659093 | 18659112 | 20 | |
| Deletion | Chr11 | 19498192 | 19498192 | 1 | |
| Deletion | Chr3 | 20200520 | 20200529 | 10 | |
| Deletion | Chr7 | 25653601 | 25653602 | 2 | |
| Deletion | Chr5 | 28886672 | 28886672 | 1 | |
| Deletion | Chr4 | 32340699 | 32340781 | 83 | |
| Deletion | Chr3 | 34562692 | 34562693 | 2 |
Insertions: 17
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 19747231 | 19747231 | 1 | |
| Insertion | Chr1 | 29019524 | 29019599 | 76 | |
| Insertion | Chr10 | 10000249 | 10000250 | 2 | |
| Insertion | Chr11 | 11452899 | 11452903 | 5 | |
| Insertion | Chr11 | 23661838 | 23661838 | 1 | |
| Insertion | Chr12 | 5334847 | 5334847 | 1 | |
| Insertion | Chr4 | 22704544 | 22704544 | 1 | |
| Insertion | Chr4 | 29173710 | 29173710 | 1 | LOC_Os04g48910 |
| Insertion | Chr6 | 29335170 | 29335170 | 1 | LOC_Os06g48490 |
| Insertion | Chr6 | 29470719 | 29470719 | 1 | |
| Insertion | Chr6 | 5136791 | 5136860 | 70 | |
| Insertion | Chr6 | 5193176 | 5193176 | 1 | |
| Insertion | Chr7 | 22474834 | 22474842 | 9 | LOC_Os07g37530 |
| Insertion | Chr7 | 22905303 | 22905303 | 1 | |
| Insertion | Chr7 | 27282369 | 27282370 | 2 | |
| Insertion | Chr9 | 16373313 | 16373315 | 3 | |
| Insertion | Chr9 | 9149340 | 9149341 | 2 |
Inversions: 7
Translocations: 2
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr9 | 6220709 | Chr2 | 17352611 | LOC_Os09g11220 |
| Translocation | Chr11 | 16831952 | Chr2 | 16308445 |