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| Mutant Information |
|---|
| Mutant Name | FN454-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN454-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 28
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 32885701 | G-A | HET | INTERGENIC | |
| SBS | Chr1 | 36248039 | C-T | HET | INTERGENIC | |
| SBS | Chr1 | 38784738 | G-T | HET | NON_SYNONYMOUS_CODING | LOC_Os01g66790 |
| SBS | Chr10 | 235156 | G-T | HET | INTERGENIC | |
| SBS | Chr10 | 5674507 | A-T | HET | INTERGENIC | |
| SBS | Chr10 | 5674512 | T-G | HET | INTERGENIC | |
| SBS | Chr11 | 11071945 | C-T | HET | INTERGENIC | |
| SBS | Chr12 | 20832275 | G-A | HET | INTERGENIC | |
| SBS | Chr2 | 11249621 | C-T | HOMO | INTERGENIC | |
| SBS | Chr2 | 30195096 | C-T | HET | INTERGENIC | |
| SBS | Chr3 | 28012560 | T-C | HOMO | INTERGENIC | |
| SBS | Chr4 | 30277445 | G-A | HET | INTERGENIC | |
| SBS | Chr4 | 33707484 | A-T | HOMO | UTR_3_PRIME | |
| SBS | Chr5 | 24324884 | G-A | HET | UTR_3_PRIME | |
| SBS | Chr5 | 24324885 | G-A | HET | UTR_3_PRIME | |
| SBS | Chr5 | 27637553 | C-T | HET | INTERGENIC | |
| SBS | Chr5 | 9837120 | T-A | HET | NON_SYNONYMOUS_CODING | LOC_Os05g17170 |
| SBS | Chr6 | 25249901 | G-A | HET | INTERGENIC | |
| SBS | Chr6 | 9831102 | G-C | HOMO | INTERGENIC | |
| SBS | Chr7 | 893362 | A-G | HET | INTERGENIC | |
| SBS | Chr8 | 12017185 | C-T | HET | INTERGENIC | |
| SBS | Chr8 | 13411875 | A-T | HET | INTERGENIC | |
| SBS | Chr8 | 16833971 | A-C | HET | INTERGENIC | |
| SBS | Chr8 | 17390213 | T-A | HET | INTRON | |
| SBS | Chr8 | 17390214 | C-T | HET | INTRON | |
| SBS | Chr8 | 5520983 | G-T | HET | UTR_3_PRIME | |
| SBS | Chr8 | 9128738 | G-C | HET | NON_SYNONYMOUS_CODING | LOC_Os08g15090 |
| SBS | Chr9 | 15619329 | G-A | HET | INTERGENIC |
Deletions: 9
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr6 | 9604343 | 9604344 | 1 | |
| Deletion | Chr6 | 9939605 | 9939610 | 5 | LOC_Os06g17140 |
| Deletion | Chr11 | 16100588 | 16100592 | 4 | |
| Deletion | Chr8 | 16833960 | 16833964 | 4 | |
| Deletion | Chr7 | 17059423 | 17059425 | 2 | |
| Deletion | Chr11 | 24727111 | 24727112 | 1 | |
| Deletion | Chr7 | 26637006 | 26637007 | 1 | LOC_Os07g44640 |
| Deletion | Chr4 | 33862197 | 33862203 | 6 | |
| Deletion | Chr3 | 34928876 | 34928885 | 9 |
No Insertion
No Inversion
Translocations: 7
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr6 | 1800464 | Chr5 | 722811 | |
| Translocation | Chr11 | 9434814 | Chr6 | 2595814 | |
| Translocation | Chr9 | 13448265 | Chr8 | 7145700 | 2 |
| Translocation | Chr9 | 16416496 | Chr2 | 2673919 | |
| Translocation | Chr3 | 22994973 | Chr2 | 13225696 | 2 |
| Translocation | Chr12 | 26428299 | Chr1 | 36307637 | 2 |
| Translocation | Chr12 | 26428300 | Chr1 | 36307049 | LOC_Os12g42550 |