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Mutant Information

Variant Information

Single base substitutions: 39

Variant Type	Chromosome	Position	Change	Genotype	Gene Affected
SBS	Chr1	34858372	C-T	HET
SBS	Chr1	6394112	G-A	HET
SBS	Chr1	9255269	A-T	HET
SBS	Chr1	9356170	G-A	HET
SBS	Chr10	10334334	C-T	HET
SBS	Chr10	13797599	G-A	HET
SBS	Chr10	16554192	G-C	HET	LOC_Os10g31590
SBS	Chr10	20376584	T-A	HET
SBS	Chr10	2897057	A-C	HET
SBS	Chr11	21704248	T-G	HET
SBS	Chr11	23878283	T-A	HET
SBS	Chr12	1049639	G-A	HET
SBS	Chr12	1389330	A-T	HET
SBS	Chr12	15227121	T-C	HET	LOC_Os12g26140
SBS	Chr12	6907880	G-A	HET
SBS	Chr2	12930893	G-A	HOMO
SBS	Chr2	23803661	G-T	HOMO
SBS	Chr2	27564285	C-T	HOMO
SBS	Chr3	11665294	C-T	HET
SBS	Chr3	17762220	C-T	HOMO
SBS	Chr3	25417901	G-A	HET
SBS	Chr3	29942168	C-T	HET
SBS	Chr3	36318314	T-A	HET
SBS	Chr4	2312592	A-G	HOMO
SBS	Chr4	9357925	A-G	HOMO
SBS	Chr5	27963696	A-G	HOMO
SBS	Chr5	5936897	A-T	HET
SBS	Chr5	7038218	G-T	HET
SBS	Chr5	8427819	C-T	HET	LOC_Os05g14820
SBS	Chr6	15199600	T-C	HET
SBS	Chr6	16735620	T-C	HET
SBS	Chr7	13819408	G-A	HET
SBS	Chr7	27768532	T-A	HET
SBS	Chr7	8138864	A-G	HET	LOC_Os07g14270
SBS	Chr8	10833192	C-T	HET	LOC_Os08g17700
SBS	Chr8	23857951	T-C	HET
SBS	Chr8	4053730	C-T	HOMO
SBS	Chr8	5974325	G-A	HET
SBS	Chr9	12077756	G-A	HET

Deletions: 33

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr7	545670	545672	3
Deletion	Chr7	2273001	2279000	6000	2
Deletion	Chr4	2312567	2312567	1
Deletion	Chr2	5952347	5952347	1	LOC_Os02g11100
Deletion	Chr7	7677868	7677868	1
Deletion	Chr6	8346798	8346798	1
Deletion	Chr4	8450466	8450466	1
Deletion	Chr9	9008373	9008374	2
Deletion	Chr8	9291097	9291098	2
Deletion	Chr7	10268616	10268616	1
Deletion	Chr1	11333937	11333938	2
Deletion	Chr6	12520310	12520312	3
Deletion	Chr10	12648560	12648562	3
Deletion	Chr8	13863876	13863896	21
Deletion	Chr8	16122963	16122967	5
Deletion	Chr12	16152563	16152563	1
Deletion	Chr1	17241669	17241671	3
Deletion	Chr8	17474432	17474437	6
Deletion	Chr7	19575780	19575782	3
Deletion	Chr10	19783058	19783058	1
Deletion	Chr7	22686759	22686769	11
Deletion	Chr11	22889751	22889786	36
Deletion	Chr12	23217986	23217986	1
Deletion	Chr5	24314211	24314211	1
Deletion	Chr2	24560479	24560481	3
Deletion	Chr1	26913105	26913105	1	LOC_Os01g47100
Deletion	Chr2	27566134	27566140	7
Deletion	Chr3	28970402	28970402	1
Deletion	Chr4	30518734	30518735	2
Deletion	Chr4	31885412	31885420	9
Deletion	Chr1	36569851	36569851	1
Deletion	Chr1	40459399	40459399	1
Deletion	Chr1	40669139	40669142	4

Insertions: 13

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr10	10085326	10085327	2
Insertion	Chr12	18740502	18740502	1
Insertion	Chr2	20292549	20292551	3
Insertion	Chr2	27864038	27864042	5
Insertion	Chr2	29142006	29142006	1
Insertion	Chr5	11525957	11525957	1
Insertion	Chr6	20314291	20314293	3
Insertion	Chr6	30375860	30375860	1
Insertion	Chr7	12514189	12514189	1
Insertion	Chr7	14068201	14068201	1
Insertion	Chr7	7364265	7364265	1
Insertion	Chr8	17046580	17046638	59
Insertion	Chr9	989389	989404	16

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	15734512	16166644	LOC_Os05g27060

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	4980292	Chr3	15238103
Translocation	Chr4	18572027	Chr1	40671556
Translocation	Chr4	18572034	Chr1	40668710	LOC_Os01g70240
Translocation	Chr7	21056635	Chr4	13790732

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