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| Mutant Information |
|---|
| Mutant Name | FN4549-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4549-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 29
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 10667030 | A-T | HET | ||
| SBS | Chr10 | 11019683 | C-T | HET | ||
| SBS | Chr10 | 22808378 | C-T | HET | LOC_Os10g42364 | |
| SBS | Chr10 | 3184070 | G-A | HET | ||
| SBS | Chr10 | 8766341 | A-G | HET | ||
| SBS | Chr11 | 13791021 | A-T | HET | ||
| SBS | Chr11 | 13791022 | A-T | HET | ||
| SBS | Chr12 | 11468824 | T-G | HOMO | ||
| SBS | Chr12 | 14253124 | G-A | HET | ||
| SBS | Chr12 | 27440589 | A-G | HET | ||
| SBS | Chr2 | 33171085 | C-T | HOMO | ||
| SBS | Chr2 | 7441153 | C-G | HOMO | ||
| SBS | Chr3 | 33521355 | C-T | HOMO | LOC_Os03g58880 | |
| SBS | Chr3 | 33521357 | C-T | HOMO | LOC_Os03g58880 | |
| SBS | Chr4 | 26353955 | T-C | HOMO | ||
| SBS | Chr4 | 3116779 | C-T | HOMO | LOC_Os04g06010 | |
| SBS | Chr4 | 31939812 | G-T | HET | ||
| SBS | Chr4 | 9811268 | G-A | HET | ||
| SBS | Chr6 | 15954567 | C-G | HET | LOC_Os06g28090 | |
| SBS | Chr6 | 2485682 | C-T | HET | ||
| SBS | Chr6 | 25867694 | G-A | HET | ||
| SBS | Chr6 | 29580908 | C-T | HET | ||
| SBS | Chr6 | 6968587 | G-A | HOMO | ||
| SBS | Chr7 | 23880046 | A-T | HET | ||
| SBS | Chr7 | 23880047 | C-T | HET | ||
| SBS | Chr8 | 18909824 | C-T | HET | ||
| SBS | Chr8 | 19959876 | C-T | HET | LOC_Os08g32180 | |
| SBS | Chr8 | 450605 | A-G | HET | ||
| SBS | Chr9 | 10276993 | T-C | HET |
Deletions: 16
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr10 | 7698479 | 7698479 | 1 | |
| Deletion | Chr2 | 11536701 | 11536710 | 10 | |
| Deletion | Chr8 | 12230927 | 12230927 | 1 | |
| Deletion | Chr7 | 12371335 | 12371335 | 1 | |
| Deletion | Chr6 | 13968422 | 13968423 | 2 | |
| Deletion | Chr11 | 19855181 | 19855181 | 1 | |
| Deletion | Chr12 | 22460001 | 22523000 | 63000 | 11 |
| Deletion | Chr4 | 22672461 | 22672461 | 1 | |
| Deletion | Chr4 | 22786752 | 22786756 | 5 | LOC_Os04g38290 |
| Deletion | Chr2 | 24758848 | 24758863 | 16 | |
| Deletion | Chr1 | 24882499 | 24882551 | 53 | |
| Deletion | Chr2 | 25552322 | 25552393 | 72 | |
| Deletion | Chr6 | 26550183 | 26550185 | 3 | |
| Deletion | Chr8 | 27883292 | 27883327 | 36 | |
| Deletion | Chr6 | 28741423 | 28741423 | 1 | |
| Deletion | Chr3 | 29213524 | 29213524 | 1 |
Insertions: 11
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 40944114 | 40944114 | 1 | |
| Insertion | Chr10 | 10690027 | 10690027 | 1 | LOC_Os10g21080 |
| Insertion | Chr12 | 18403265 | 18403284 | 20 | |
| Insertion | Chr12 | 19220177 | 19220177 | 1 | |
| Insertion | Chr2 | 15328892 | 15328893 | 2 | |
| Insertion | Chr2 | 25467354 | 25467363 | 10 | |
| Insertion | Chr3 | 15138760 | 15138780 | 21 | LOC_Os03g26510 |
| Insertion | Chr5 | 11921487 | 11921487 | 1 | LOC_Os05g20330 |
| Insertion | Chr5 | 4665140 | 4665140 | 1 | |
| Insertion | Chr8 | 11981481 | 11981481 | 1 | |
| Insertion | Chr8 | 12438243 | 12438243 | 1 |
Inversions: 3
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr1 | 2636173 | 2636300 | LOC_Os01g05530 |
| Inversion | Chr3 | 33521503 | 33806908 | LOC_Os03g58880 |
| Inversion | Chr3 | 33521507 | 33806909 | LOC_Os03g58880 |
Translocations: 2
| Variant Type | Chromosome | Position 1 | Chromosome | Position 2 | Number of Genes |
|---|---|---|---|---|---|
| Translocation | Chr11 | 26375914 | Chr3 | 16345227 | LOC_Os11g43690 |
| Translocation | Chr11 | 26378132 | Chr3 | 16345218 | LOC_Os11g43700 |