Search Nipponbare

Mutant Information

Variant Information

Single base substitutions: 31

Variant Type	Chromosome	Position	Change	Genotype	Gene Affected
SBS	Chr1	17742639	A-C	HOMO
SBS	Chr1	39867696	G-A	HET
SBS	Chr10	11333463	C-G	HET	LOC_Os10g21950
SBS	Chr10	14180367	C-T	HET
SBS	Chr10	5820962	A-T	HET
SBS	Chr11	3895370	C-T	HET
SBS	Chr12	8004684	C-A	HET
SBS	Chr2	18642778	C-T	HET
SBS	Chr2	28597173	A-G	HET	LOC_Os02g46880
SBS	Chr2	29491610	C-T	HOMO
SBS	Chr2	33598469	T-C	HET
SBS	Chr3	23097437	C-T	HET
SBS	Chr4	10913214	G-A	HET	LOC_Os04g19590
SBS	Chr4	12498038	C-T	HET
SBS	Chr4	14078281	C-T	HET	LOC_Os04g24540
SBS	Chr4	20933182	C-A	HET
SBS	Chr4	23743311	A-G	HET
SBS	Chr4	25710296	T-A	HET
SBS	Chr5	19653738	G-A	HET
SBS	Chr5	21934067	G-A	HET
SBS	Chr5	25532267	C-T	HET
SBS	Chr5	29641713	A-T	HET
SBS	Chr6	16316543	T-G	HET
SBS	Chr6	24820993	A-G	HOMO
SBS	Chr7	12480463	T-A	HET
SBS	Chr7	1430701	G-A	HET
SBS	Chr8	10284811	A-G	HET
SBS	Chr8	6464100	G-T	HOMO	LOC_Os08g10960
SBS	Chr9	11247983	C-T	HET	LOC_Os09g18330
SBS	Chr9	21574879	C-T	HOMO	LOC_Os09g37360
SBS	Chr9	21892115	G-A	HOMO

Deletions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	3209087	3209093	7
Deletion	Chr1	4261582	4261582	1
Deletion	Chr6	6139360	6139360	1
Deletion	Chr2	7726641	7726641	1
Deletion	Chr5	14803613	14803615	3
Deletion	Chr2	17152003	17152003	1	LOC_Os02g28970
Deletion	Chr8	17249974	17249976	3
Deletion	Chr7	18250799	18250800	2
Deletion	Chr5	18351135	18351136	2
Deletion	Chr8	18438930	18438930	1
Deletion	Chr7	18936645	18936710	66
Deletion	Chr7	22416553	22416556	4	LOC_Os07g37420
Deletion	Chr5	25235024	25235024	1
Deletion	Chr7	28112072	28112074	3
Deletion	Chr3	28267931	28267932	2
Deletion	Chr3	32483654	32483661	8
Deletion	Chr1	40316936	40316936	1

Insertions: 17

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	28898732	28898732	1
Insertion	Chr1	29171271	29171272	2	LOC_Os01g50780
Insertion	Chr1	36086408	36086409	2
Insertion	Chr10	13742558	13742559	2
Insertion	Chr10	9358347	9358348	2
Insertion	Chr11	4822844	4822872	29
Insertion	Chr2	23520894	23520894	1
Insertion	Chr2	24799047	24799051	5
Insertion	Chr3	20551471	20551472	2
Insertion	Chr3	21507302	21507302	1
Insertion	Chr3	6080550	6080550	1
Insertion	Chr6	11823871	11823904	34
Insertion	Chr6	24395121	24395121	1
Insertion	Chr7	1653220	1653220	1
Insertion	Chr9	16368963	16368963	1
Insertion	Chr9	21472841	21472859	19
Insertion	Chr9	7152062	7152103	42

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	15503042	15503135
Inversion	Chr8	19266247	19266472

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr9	2741911	Chr7	10663578	2
Translocation	Chr7	9807567	Chr4	26425434
Translocation	Chr7	9820262	Chr4	26425219
Translocation	Chr10	17669808	Chr7	26506267

Main menu