Search Results
| Mutant Information |
|---|
| Mutant Name | FN4563-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4563-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 28
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr2 | 12720999 | C-T | HET | ||
| SBS | Chr3 | 1813734 | C-T | HET | ||
| SBS | Chr4 | 11655148 | T-A | HET | ||
| SBS | Chr4 | 11655149 | A-T | HET | ||
| SBS | Chr4 | 11655151 | C-A | HET | ||
| SBS | Chr4 | 13057981 | A-T | HET | ||
| SBS | Chr4 | 15539891 | G-A | HET | ||
| SBS | Chr4 | 16203903 | C-A | HOMO | ||
| SBS | Chr4 | 34028849 | C-T | HET | ||
| SBS | Chr5 | 2168936 | C-T | HOMO | ||
| SBS | Chr6 | 2910922 | C-T | HET | ||
| SBS | Chr6 | 7989171 | G-A | HOMO | ||
| SBS | Chr6 | 17754192 | T-C | HOMO | ||
| SBS | Chr6 | 27244927 | T-A | HET | LOC_Os06g45030 | |
| SBS | Chr8 | 6926505 | C-T | HET | ||
| SBS | Chr8 | 15781955 | G-A | HET | LOC_Os08g25940 | |
| SBS | Chr8 | 22202874 | C-T | HET | ||
| SBS | Chr9 | 2742228 | G-A | HET | ||
| SBS | Chr9 | 9640397 | C-T | HET | ||
| SBS | Chr9 | 12081581 | T-A | HET | LOC_Os09g20170 | |
| SBS | Chr9 | 12081582 | G-A | HET | ||
| SBS | Chr9 | 13066983 | T-C | HET | ||
| SBS | Chr10 | 4619181 | G-A | HOMO | ||
| SBS | Chr10 | 7494760 | A-G | HOMO | ||
| SBS | Chr10 | 8362016 | G-A | HOMO | ||
| SBS | Chr10 | 10546133 | C-T | HOMO | ||
| SBS | Chr10 | 14224734 | C-T | HOMO | ||
| SBS | Chr11 | 14916953 | C-T | HET |
Deletions: 20
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr11 | 617582 | 617585 | 4 | |
| Deletion | Chr11 | 1733009 | 1733013 | 5 | |
| Deletion | Chr10 | 5130439 | 5130439 | 1 | |
| Deletion | Chr1 | 5279070 | 5279076 | 7 | |
| Deletion | Chr12 | 10783254 | 10783254 | 1 | |
| Deletion | Chr7 | 12169778 | 12169778 | 1 | |
| Deletion | Chr1 | 13638373 | 13638373 | 1 | |
| Deletion | Chr5 | 15279212 | 15279212 | 1 | |
| Deletion | Chr9 | 15506057 | 15506060 | 4 | LOC_Os09g25860 |
| Deletion | Chr4 | 16328110 | 16328110 | 1 | |
| Deletion | Chr12 | 20560001 | 20572000 | 12000 | LOC_Os12g34050 |
| Deletion | Chr12 | 20591001 | 20603000 | 12000 | LOC_Os12g34090 |
| Deletion | Chr12 | 20596266 | 20596266 | 1 | LOC_Os12g34090 |
| Deletion | Chr12 | 23758825 | 23758834 | 10 | |
| Deletion | Chr6 | 24414618 | 24414619 | 2 | |
| Deletion | Chr6 | 24501575 | 24501575 | 1 | |
| Deletion | Chr3 | 29725660 | 29725662 | 3 | |
| Deletion | Chr3 | 31137993 | 31137993 | 1 | |
| Deletion | Chr1 | 32866744 | 32866744 | 1 | |
| Deletion | Chr3 | 35231612 | 35231626 | 15 |
Insertions: 24
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 1564650 | 1564664 | 15 | |
| Insertion | Chr1 | 4759523 | 4759582 | 60 | |
| Insertion | Chr1 | 29010812 | 29010814 | 3 | |
| Insertion | Chr1 | 37205840 | 37205840 | 1 | |
| Insertion | Chr3 | 6340480 | 6340483 | 4 | LOC_Os03g12080 |
| Insertion | Chr4 | 2629267 | 2629268 | 2 | |
| Insertion | Chr5 | 7356494 | 7356621 | 128 | |
| Insertion | Chr5 | 29396209 | 29396280 | 72 | LOC_Os05g51250 |
| Insertion | Chr6 | 6363576 | 6363578 | 3 | |
| Insertion | Chr7 | 1308316 | 1308333 | 18 | |
| Insertion | Chr7 | 17965031 | 17965031 | 1 | |
| Insertion | Chr10 | 2076631 | 2076632 | 2 | |
| Insertion | Chr10 | 4299560 | 4299589 | 30 | |
| Insertion | Chr11 | 6016611 | 6016611 | 1 | |
| Insertion | Chr11 | 28692799 | 28692804 | 6 | |
| Insertion | Chr12 | 9640716 | 9640717 | 2 | |
| Insertion | Chr12 | 19535560 | 19535560 | 1 | |
| Insertion | Chr12 | 20595457 | 20595457 | 1 | LOC_Os12g34090 |
| Insertion | Chr2 | 25261032 | 25261032 | 1 | |
| Insertion | Chr3 | 382860 | 382860 | 1 | |
| Insertion | Chr5 | 1261571 | 1261571 | 1 | |
| Insertion | Chr6 | 29976376 | 29976376 | 1 | |
| Insertion | Chr7 | 8445864 | 8445864 | 1 | |
| Insertion | Chr11 | 11970285 | 11970285 | 1 | LOC_Os11g20650 |
Inversions: 4
| Variant Type | Chromosome | Position 1 | Position 2 | Number of Genes |
|---|---|---|---|---|
| Inversion | Chr1 | 9810523 | 10554617 | LOC_Os01g17065 |
| Inversion | Chr1 | 9810538 | 10554627 | LOC_Os01g17065 |
| Inversion | Chr9 | 19463055 | 19463304 | |
| Inversion | Chr5 | 24252393 | 24252519 |
No Translocation