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Mutant Information

Variant Information

Single base substitutions: 21

Variant Type	Chromosome	Position	Change	Genotype	Gene Affected
SBS	Chr1	11383728	G-A	HET	LOC_Os01g20040
SBS	Chr1	22147780	C-T	HET
SBS	Chr1	4232816	C-T	HOMO	LOC_Os01g08530
SBS	Chr10	10989047	T-C	HOMO	LOC_Os10g21460
SBS	Chr11	14122947	T-C	HET
SBS	Chr11	7611238	C-A	HET
SBS	Chr2	33308441	C-A	HET
SBS	Chr2	6366836	G-A	HET
SBS	Chr3	18758778	G-T	HET
SBS	Chr3	21459208	C-T	HOMO
SBS	Chr4	1513664	G-A	HET
SBS	Chr5	20854200	C-T	HET
SBS	Chr5	27017318	C-T	HET
SBS	Chr5	5597018	G-T	HET
SBS	Chr6	17709007	C-A	HET
SBS	Chr6	28494236	C-T	HET
SBS	Chr7	12877479	C-T	HET	LOC_Os07g22830
SBS	Chr7	15709598	G-T	HET
SBS	Chr7	7683970	C-T	HET
SBS	Chr7	9786780	G-T	HET
SBS	Chr8	3458578	G-A	HET

Deletions: 28

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr8	1557630	1557637	8
Deletion	Chr9	3545865	3545865	1
Deletion	Chr10	5639425	5639447	23
Deletion	Chr12	7795869	7795894	26
Deletion	Chr2	8195377	8195377	1
Deletion	Chr8	8654320	8654320	1
Deletion	Chr12	9196743	9196743	1
Deletion	Chr7	9576891	9576891	1
Deletion	Chr1	11576577	11576577	1
Deletion	Chr8	11657428	11657428	1
Deletion	Chr11	12088618	12088620	3
Deletion	Chr8	12846923	12846926	4
Deletion	Chr11	13077733	13077733	1
Deletion	Chr5	16959924	16959924	1
Deletion	Chr11	17726142	17726156	15
Deletion	Chr5	19114001	19142000	28000	6
Deletion	Chr5	20557690	20557690	1
Deletion	Chr8	21273554	21273558	5
Deletion	Chr8	22107742	22107747	6	LOC_Os08g35070
Deletion	Chr4	22528232	22528319	88
Deletion	Chr1	23571097	23571097	1
Deletion	Chr4	25411507	25411510	4
Deletion	Chr11	25485857	25485862	6	LOC_Os11g42320
Deletion	Chr2	25942146	25942151	6	LOC_Os02g43080
Deletion	Chr6	25979392	25979392	1
Deletion	Chr5	27766172	27766183	12	LOC_Os05g48422
Deletion	Chr2	33162975	33162981	7	LOC_Os02g54120
Deletion	Chr4	34963332	34963332	1

Insertions: 13

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	40088705	40088705	1
Insertion	Chr11	9493475	9493475	1
Insertion	Chr12	20153244	20153319	76
Insertion	Chr12	5942715	5942715	1
Insertion	Chr4	15570037	15570051	15	LOC_Os04g26680
Insertion	Chr4	17082970	17083074	105
Insertion	Chr5	26625096	26625096	1
Insertion	Chr6	16047137	16047205	69
Insertion	Chr6	9504589	9504589	1
Insertion	Chr7	23876141	23876141	1
Insertion	Chr8	2146253	2146258	6
Insertion	Chr8	22220145	22220145	1
Insertion	Chr9	2154177	2154178	2

Inversions: 6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	4152203	4663851	LOC_Os07g08970
Inversion	Chr6	7785191	7812569
Inversion	Chr6	7785202	7812569
Inversion	Chr8	14476424	14476620
Inversion	Chr4	21799983	22027636	LOC_Os04g36070
Inversion	Chr1	28734895	28824321	LOC_Os01g50010

Translocations: 2

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr6	26384602	Chr2	2055093	LOC_Os02g04590
Translocation	Chr6	26384604	Chr2	2050814

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