Search Results
| Mutant Information |
|---|
| Mutant Name | FN4565-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4565-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
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| Variant Information |
|---|
Single base substitutions: 40
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 2804088 | A-G | HET | ||
| SBS | Chr1 | 5740833 | G-A | HET | ||
| SBS | Chr1 | 20595576 | C-A | HET | LOC_Os01g36940 | |
| SBS | Chr1 | 26321640 | A-T | HET | LOC_Os01g46290 | |
| SBS | Chr1 | 26321641 | A-T | HET | LOC_Os01g46290 | |
| SBS | Chr1 | 34369281 | C-T | HET | ||
| SBS | Chr2 | 12244902 | G-A | HET | ||
| SBS | Chr2 | 19742280 | A-T | HET | ||
| SBS | Chr2 | 19742302 | G-A | HET | ||
| SBS | Chr3 | 24046795 | G-T | HET | LOC_Os03g43100 | |
| SBS | Chr3 | 30500049 | C-T | HET | ||
| SBS | Chr3 | 34369311 | C-T | HET | ||
| SBS | Chr3 | 34369320 | G-A | HET | ||
| SBS | Chr3 | 34369321 | A-T | HET | ||
| SBS | Chr4 | 8761640 | C-A | HOMO | ||
| SBS | Chr4 | 8761644 | A-G | HOMO | ||
| SBS | Chr4 | 20781313 | G-A | HET | ||
| SBS | Chr4 | 22768496 | C-T | HET | ||
| SBS | Chr4 | 23244824 | T-C | HET | ||
| SBS | Chr4 | 26209534 | A-C | HOMO | ||
| SBS | Chr4 | 29244061 | G-A | HOMO | ||
| SBS | Chr5 | 1715139 | T-C | HET | ||
| SBS | Chr5 | 5894046 | G-A | HET | LOC_Os05g10710 | |
| SBS | Chr5 | 20018224 | G-A | HET | ||
| SBS | Chr6 | 2421030 | C-T | HOMO | ||
| SBS | Chr7 | 2335439 | C-T | HET | ||
| SBS | Chr7 | 15513569 | T-C | HET | ||
| SBS | Chr8 | 5004905 | A-G | HOMO | ||
| SBS | Chr8 | 8906899 | T-C | HET | ||
| SBS | Chr8 | 17624751 | C-A | HOMO | ||
| SBS | Chr8 | 23358853 | T-G | HOMO | ||
| SBS | Chr8 | 24250305 | T-C | HET | ||
| SBS | Chr9 | 4368962 | C-T | HET | ||
| SBS | Chr10 | 882838 | T-G | HET | ||
| SBS | Chr10 | 886375 | T-A | HET | LOC_Os10g02420 | |
| SBS | Chr10 | 6966343 | G-A | HOMO | ||
| SBS | Chr10 | 14639322 | G-A | HET | ||
| SBS | Chr11 | 4086669 | C-T | HET | LOC_Os11g07912 | |
| SBS | Chr11 | 15802614 | C-T | HET | ||
| SBS | Chr12 | 14093468 | G-A | HET |
Deletions: 24
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr9 | 2437290 | 2437290 | 1 | |
| Deletion | Chr3 | 3298778 | 3298831 | 54 | LOC_Os03g06550 |
| Deletion | Chr6 | 5615032 | 5615035 | 4 | |
| Deletion | Chr11 | 6521225 | 6521235 | 11 | LOC_Os11g11730 |
| Deletion | Chr1 | 6731338 | 6731341 | 4 | |
| Deletion | Chr9 | 7123319 | 7123319 | 1 | |
| Deletion | Chr4 | 7507259 | 7507267 | 9 | |
| Deletion | Chr7 | 9248233 | 9248233 | 1 | |
| Deletion | Chr5 | 9904292 | 9904292 | 1 | |
| Deletion | Chr2 | 11616134 | 11616135 | 2 | |
| Deletion | Chr12 | 12044176 | 12044176 | 1 | |
| Deletion | Chr9 | 12790643 | 12790661 | 19 | LOC_Os09g21200 |
| Deletion | Chr4 | 14111089 | 14111089 | 1 | |
| Deletion | Chr6 | 14670413 | 14670436 | 24 | |
| Deletion | Chr12 | 15247021 | 15247021 | 1 | |
| Deletion | Chr7 | 15741394 | 15741395 | 2 | LOC_Os07g27140 |
| Deletion | Chr10 | 19500161 | 19500171 | 11 | |
| Deletion | Chr12 | 22094081 | 22094093 | 13 | |
| Deletion | Chr6 | 22395256 | 22395338 | 83 | |
| Deletion | Chr1 | 23422740 | 23422740 | 1 | |
| Deletion | Chr2 | 23429811 | 23429814 | 4 | |
| Deletion | Chr7 | 26828542 | 26828542 | 1 | |
| Deletion | Chr8 | 28352406 | 28352423 | 18 | |
| Deletion | Chr3 | 34006098 | 34006107 | 10 |
Insertions: 18
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Insertion | Chr1 | 11509713 | 11509715 | 3 | |
| Insertion | Chr3 | 18175295 | 18175295 | 1 | LOC_Os03g31770 |
| Insertion | Chr5 | 26743015 | 26743130 | 116 | |
| Insertion | Chr6 | 22508515 | 22508579 | 65 | |
| Insertion | Chr7 | 27782260 | 27782308 | 49 | |
| Insertion | Chr8 | 1839331 | 1839335 | 5 | |
| Insertion | Chr9 | 16141238 | 16141357 | 120 | |
| Insertion | Chr10 | 14891230 | 14891292 | 63 | LOC_Os10g28590 |
| Insertion | Chr11 | 28168854 | 28168905 | 52 | |
| Insertion | Chr12 | 17524445 | 17524446 | 2 | |
| Insertion | Chr12 | 18817390 | 18817390 | 1 | |
| Insertion | Chr12 | 22243474 | 22243474 | 1 | |
| Insertion | Chr12 | 25821821 | 25821826 | 6 | |
| Insertion | Chr2 | 19435535 | 19435539 | 5 | |
| Insertion | Chr2 | 31411613 | 31411613 | 1 | |
| Insertion | Chr5 | 24996207 | 24996207 | 1 | |
| Insertion | Chr6 | 26149697 | 26149699 | 3 | |
| Insertion | Chr8 | 5167477 | 5167477 | 1 |
No Inversion
No Translocation