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Mutant Information

Variant Information

Single base substitutions: 43

Variant Type	Chromosome	Position	Change	Genotype	Gene Affected
SBS	Chr1	5431889	C-A	HET
SBS	Chr1	7157343	C-T	HOMO
SBS	Chr1	7271365	A-T	HET
SBS	Chr1	11177772	A-G	HOMO
SBS	Chr1	32623462	A-T	HOMO
SBS	Chr2	3813163	G-A	HET	LOC_Os02g07380
SBS	Chr2	33486541	T-C	HET
SBS	Chr3	11009500	C-A	HET
SBS	Chr4	543445	C-T	HET
SBS	Chr4	8380240	C-T	HET
SBS	Chr4	10083805	C-T	HET
SBS	Chr4	21290955	C-T	HET
SBS	Chr4	23688336	C-T	HET
SBS	Chr4	29273504	C-T	HET
SBS	Chr4	35434027	C-T	HET
SBS	Chr5	7663366	G-A	HET
SBS	Chr5	11794088	G-A	HOMO
SBS	Chr5	13706674	A-G	HET
SBS	Chr5	19123591	T-C	HET
SBS	Chr5	23226998	C-T	HET	LOC_Os05g39570
SBS	Chr5	29004962	G-A	HET	LOC_Os05g50600
SBS	Chr6	3744384	T-A	HOMO
SBS	Chr6	10861035	G-T	HET	LOC_Os06g19090
SBS	Chr6	15024624	G-A	HET
SBS	Chr6	15167187	C-T	HET
SBS	Chr6	16777020	G-T	HET
SBS	Chr6	17111170	C-G	HOMO
SBS	Chr7	1900405	A-T	HET
SBS	Chr7	7575863	G-A	HET
SBS	Chr7	11202939	G-A	HOMO
SBS	Chr7	24767661	G-A	HET
SBS	Chr7	27884032	G-T	HET
SBS	Chr8	1406174	A-T	HOMO
SBS	Chr8	7511276	A-C	HOMO
SBS	Chr8	17429485	T-C	HOMO
SBS	Chr8	25919297	G-A	HET	LOC_Os08g40960
SBS	Chr9	19545762	G-A	HET
SBS	Chr10	6452740	G-A	HET
SBS	Chr10	8337962	C-T	HET
SBS	Chr10	12001228	T-A	HOMO
SBS	Chr10	14258731	A-T	HOMO
SBS	Chr11	12589662	G-T	HET
SBS	Chr12	14589194	G-T	HET

Deletions: 39

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr1	989424	989424	1
Deletion	Chr7	1488392	1488394	3	LOC_Os07g03670
Deletion	Chr12	2340604	2340607	4
Deletion	Chr12	2792546	2792546	1
Deletion	Chr7	3747440	3747441	2
Deletion	Chr7	3755566	3755580	15
Deletion	Chr4	3910882	3910887	6	LOC_Os04g07350
Deletion	Chr6	4345672	4345696	25
Deletion	Chr12	4515316	4515324	9
Deletion	Chr1	5631297	5631297	1
Deletion	Chr9	5770306	5770306	1
Deletion	Chr7	7042273	7042284	12
Deletion	Chr7	7055482	7055490	9
Deletion	Chr7	8154462	8154465	4
Deletion	Chr7	9906324	9906324	1	LOC_Os07g16850
Deletion	Chr1	10595489	10595491	3
Deletion	Chr9	10709948	10710036	89	LOC_Os09g17510
Deletion	Chr3	12111001	12167000	56000	5
Deletion	Chr3	12917020	12917020	1
Deletion	Chr6	13237595	13237595	1
Deletion	Chr7	15844245	15844246	2
Deletion	Chr2	16523993	16523993	1
Deletion	Chr9	16663208	16663208	1
Deletion	Chr11	16995052	16995052	1
Deletion	Chr12	17124313	17124313	1
Deletion	Chr7	17905574	17905575	2
Deletion	Chr11	19359482	19359482	1
Deletion	Chr10	20745001	20755000	10000	LOC_Os10g38940
Deletion	Chr10	20801243	20801247	5
Deletion	Chr10	22543939	22543940	2
Deletion	Chr1	23070308	23070309	2
Deletion	Chr3	23970887	23970888	2
Deletion	Chr3	24715729	24715737	9
Deletion	Chr4	27944981	27944985	5
Deletion	Chr2	30254949	30254949	1	LOC_Os02g49500
Deletion	Chr3	31968717	31968717	1
Deletion	Chr3	32936001	32952000	16000	5
Deletion	Chr3	32940836	32940838	3	LOC_Os03g57808
Deletion	Chr1	37069223	37069228	6

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr1	34013342	34013342	1
Insertion	Chr4	3665369	3665371	3
Insertion	Chr5	9509534	9509534	1
Insertion	Chr6	19215919	19215919	1
Insertion	Chr7	24551252	24551252	1
Insertion	Chr12	25818934	25818935	2
Insertion	Chr7	10120528	10120529	2

Inversions: 2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	18583062	18583391
Inversion	Chr7	21168374	21168534

Translocations: 11

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	4962396	Chr10	8686855
Translocation	Chr7	7165121	Chr1	39608515	2
Translocation	Chr7	7165712	Chr1	39608511	2
Translocation	Chr12	12069143	Chr2	25830720
Translocation	Chr12	12069331	Chr2	25830717
Translocation	Chr10	20745137	Chr1	2891632	LOC_Os10g38940
Translocation	Chr10	20755276	Chr3	5698770
Translocation	Chr10	20766518	Chr1	2830179
Translocation	Chr10	20766645	Chr1	2891660
Translocation	Chr6	25798698	Chr3	35410876	LOC_Os03g62539
Translocation	Chr6	25798704	Chr3	35405000	LOC_Os03g62522

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