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Mutant Information

Variant Information

Single base substitutions: 27

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3905569	T-A	HOMO	SYNONYMOUS_CODING
SBS	Chr1	5958074	A-C	HOMO	INTERGENIC
SBS	Chr1	16914760	G-C	HET	INTERGENIC
SBS	Chr1	17621492	T-A	HOMO	INTRON
SBS	Chr1	36238679	C-T	HET	SYNONYMOUS_CODING
SBS	Chr1	36283102	C-A	HET	STOP_GAINED	LOC_Os01g62650
SBS	Chr1	38720417	T-C	HET	INTERGENIC
SBS	Chr2	26362221	C-T	HET	INTERGENIC
SBS	Chr3	21766056	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os03g39190
SBS	Chr4	5690298	G-A	HOMO	INTERGENIC
SBS	Chr4	18590647	A-T	HET	NON_SYNONYMOUS_CODING	LOC_Os04g31090
SBS	Chr5	886883	T-C	HET	INTERGENIC
SBS	Chr5	6865757	C-A	HOMO	INTERGENIC
SBS	Chr6	6009936	A-G	HET	NON_SYNONYMOUS_CODING	LOC_Os06g11400
SBS	Chr6	12961534	G-T	HET	INTERGENIC
SBS	Chr6	14270898	C-T	HOMO	INTERGENIC
SBS	Chr6	25599407	T-C	HET	SYNONYMOUS_CODING
SBS	Chr8	3821516	C-G	HET	INTERGENIC
SBS	Chr8	26740899	T-A	HOMO	INTERGENIC
SBS	Chr9	20119980	T-A	HOMO	INTRON
SBS	Chr9	20455985	T-C	HOMO	INTERGENIC
SBS	Chr9	20852245	T-C	HOMO	INTERGENIC
SBS	Chr10	6932766	C-T	HOMO	NON_SYNONYMOUS_CODING	LOC_Os10g12470
SBS	Chr11	10483476	C-G	HOMO	INTERGENIC
SBS	Chr12	2361139	G-A	HOMO	INTERGENIC
SBS	Chr12	15675458	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr12	19817785	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os12g32800

Deletions: 26

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr11	170903	170917	14
Deletion	Chr5	524617	524619	2
Deletion	Chr1	1410860	1410862	2
Deletion	Chr6	1490713	1490729	16
Deletion	Chr12	3718207	3718208	1
Deletion	Chr4	4055832	4055833	1
Deletion	Chr9	4329713	4331743	2030	LOC_Os09g08360
Deletion	Chr1	4634963	4634966	3
Deletion	Chr8	5416650	5416685	35
Deletion	Chr5	5640427	5640466	39
Deletion	Chr5	6507660	6507667	7	LOC_Os05g11490
Deletion	Chr6	7009578	7313368	303790	48
Deletion	Chr6	8125337	8125339	2
Deletion	Chr3	9208546	9208552	6
Deletion	Chr11	10348340	10348348	8
Deletion	Chr2	15880414	15880415	1	LOC_Os02g27010
Deletion	Chr5	19218222	19218234	12	LOC_Os05g32810
Deletion	Chr12	21933851	21933857	6
Deletion	Chr3	22127001	22140000	13000	2
Deletion	Chr3	22325477	22325479	2
Deletion	Chr9	22572016	22572020	4
Deletion	Chr11	23124040	23124041	1
Deletion	Chr1	29083001	29095000	12000	3
Deletion	Chr2	29991542	29991543	1
Deletion	Chr2	32865479	32865485	6	LOC_Os02g53700
Deletion	Chr1	37812129	37812137	8	LOC_Os01g65140

Insertions: 7

Variant Type	Chromosome	Start	End	Size (bp)
Insertion	Chr11	14808903	14808903	1
Insertion	Chr3	31100647	31100648	2
Insertion	Chr1	4876397	4876399	3
Insertion	Chr6	23545576	23545578	3
Insertion	Chr2	2937606	2937606	1
Insertion	Chr2	35176583	35176583	1
Insertion	Chr5	28600419	28600419	1

No Inversion

Translocations: 8

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr2	1185889	Chr1	3424827	2
Translocation	Chr2	1216416	Chr1	3424821	2
Translocation	Chr7	9719528	Chr6	7018694	LOC_Os07g16570
Translocation	Chr7	9719532	Chr6	7009591	LOC_Os07g16570
Translocation	Chr10	11115535	Chr4	30456390
Translocation	Chr12	12338904	Chr9	4329720	2
Translocation	Chr8	17546238	Chr4	12566276
Translocation	Chr3	31848960	Chr2	20082650	LOC_Os02g33680

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