Search Nipponbare
| Mutant Information |
|---|
| Mutant Name | FN4572-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN4572-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Mapping (Hover to Zoom-In) | 
|
| Variant Information |
|---|
Single base substitutions: 36
| Variant Type | Chromosome | Position | Change | Genotype | Effect | Gene Affected |
|---|---|---|---|---|---|---|
| SBS | Chr1 | 16532785 | C-T | HET | ||
| SBS | Chr1 | 17829308 | G-A | HET | ||
| SBS | Chr1 | 26255169 | G-A | HOMO | ||
| SBS | Chr1 | 38570560 | G-C | HET | ||
| SBS | Chr1 | 7327247 | C-T | HET | ||
| SBS | Chr10 | 16810202 | C-A | HOMO | LOC_Os10g31990 | |
| SBS | Chr10 | 16929701 | C-T | HET | LOC_Os10g32250 | |
| SBS | Chr10 | 21464748 | T-C | HOMO | ||
| SBS | Chr11 | 10679034 | G-A | HET | ||
| SBS | Chr11 | 12707277 | C-A | HET | ||
| SBS | Chr11 | 13807445 | A-G | HET | ||
| SBS | Chr11 | 14761030 | C-G | HET | ||
| SBS | Chr11 | 3629918 | A-G | HET | LOC_Os11g07225 | |
| SBS | Chr12 | 13990876 | A-G | HET | ||
| SBS | Chr12 | 15014440 | A-T | HET | ||
| SBS | Chr12 | 21101180 | A-G | HOMO | LOC_Os12g34760 | |
| SBS | Chr2 | 15192491 | T-A | HET | ||
| SBS | Chr2 | 34972081 | G-A | HOMO | ||
| SBS | Chr3 | 24271172 | C-T | HOMO | ||
| SBS | Chr3 | 29602970 | C-A | HET | ||
| SBS | Chr3 | 35330562 | C-T | HET | LOC_Os03g62360 | |
| SBS | Chr4 | 10456881 | A-T | HOMO | ||
| SBS | Chr4 | 28876752 | T-A | HOMO | ||
| SBS | Chr4 | 3486302 | A-G | HOMO | ||
| SBS | Chr5 | 14071395 | A-C | HET | LOC_Os05g24320 | |
| SBS | Chr5 | 5658721 | G-A | HET | ||
| SBS | Chr6 | 15787237 | T-G | HET | ||
| SBS | Chr7 | 10793362 | A-T | HET | ||
| SBS | Chr7 | 10951456 | T-C | HET | ||
| SBS | Chr7 | 7383351 | T-G | HET | ||
| SBS | Chr8 | 27386256 | T-A | HET | ||
| SBS | Chr8 | 5237339 | C-T | HET | ||
| SBS | Chr9 | 15708475 | T-A | HOMO | ||
| SBS | Chr9 | 17093266 | C-G | HET | LOC_Os09g28180 | |
| SBS | Chr9 | 2353845 | C-A | HET | ||
| SBS | Chr9 | 5916347 | T-C | HET |
Deletions: 24
| Variant Type | Chromosome | Start | End | Size (bp) | Number of Genes |
|---|---|---|---|---|---|
| Deletion | Chr3 | 2417129 | 2417133 | 5 | LOC_Os03g04990 |
| Deletion | Chr1 | 2998293 | 2998378 | 86 | |
| Deletion | Chr11 | 3726419 | 3726423 | 5 | |
| Deletion | Chr11 | 7116366 | 7116366 | 1 | |
| Deletion | Chr10 | 7441330 | 7441335 | 6 | LOC_Os10g13700 |
| Deletion | Chr4 | 8225978 | 8225985 | 8 | |
| Deletion | Chr11 | 8237620 | 8237621 | 2 | |
| Deletion | Chr11 | 8800486 | 8800486 | 1 | |
| Deletion | Chr7 | 11135520 | 11135520 | 1 | |
| Deletion | Chr8 | 11880722 | 11880722 | 1 | |
| Deletion | Chr4 | 13980645 | 13980645 | 1 | |
| Deletion | Chr8 | 14067100 | 14067111 | 12 | LOC_Os08g23300 |
| Deletion | Chr10 | 16762152 | 16762154 | 3 | |
| Deletion | Chr3 | 17018587 | 17018599 | 13 | LOC_Os03g29864 |
| Deletion | Chr3 | 17790813 | 17790813 | 1 | |
| Deletion | Chr3 | 17955815 | 17955823 | 9 | |
| Deletion | Chr10 | 18516223 | 18516223 | 1 | |
| Deletion | Chr12 | 20209420 | 20209420 | 1 | |
| Deletion | Chr1 | 21189215 | 21189216 | 2 | LOC_Os01g37860 |
| Deletion | Chr1 | 23131043 | 23131046 | 4 | |
| Deletion | Chr12 | 23376405 | 23376409 | 5 | |
| Deletion | Chr11 | 24960933 | 24960934 | 2 | |
| Deletion | Chr4 | 25100075 | 25100075 | 1 | |
| Deletion | Chr3 | 28138801 | 28138802 | 2 |
Insertions: 14
No Inversion
No Translocation