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Mutant Information

Variant Information

Single base substitutions: 27

Variant Type	Chromosome	Position	Change	Genotype	Gene Affected
SBS	Chr1	389355	G-A	HET
SBS	Chr1	23046047	T-C	HET
SBS	Chr2	4926934	C-T	HOMO
SBS	Chr2	16090649	C-T	HET	LOC_Os02g27310
SBS	Chr2	21695978	C-T	HET
SBS	Chr3	16023052	C-T	HET
SBS	Chr3	21480458	G-T	HET
SBS	Chr3	24106166	T-C	HET
SBS	Chr3	34625963	A-T	HOMO
SBS	Chr4	5436297	C-A	HOMO
SBS	Chr5	1440752	T-A	HET
SBS	Chr5	28289002	T-G	HOMO
SBS	Chr7	6907274	T-C	HOMO
SBS	Chr7	10179841	A-G	HOMO
SBS	Chr7	13497752	C-T	HOMO
SBS	Chr7	17661139	G-T	HOMO
SBS	Chr8	13241974	A-T	HET
SBS	Chr8	13777220	G-A	HOMO
SBS	Chr9	6205581	G-A	HET
SBS	Chr9	11676988	T-A	HOMO
SBS	Chr10	471121	G-C	HOMO
SBS	Chr10	9248320	G-T	HET
SBS	Chr10	19036490	C-T	HOMO
SBS	Chr11	22433992	A-T	HOMO	LOC_Os11g37860
SBS	Chr12	11753168	A-C	HET	LOC_Os12g20169
SBS	Chr12	14679320	A-C	HET
SBS	Chr12	24421899	C-T	HET

Deletions: 29

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	1766425	1766427	3
Deletion	Chr3	1859511	1859511	1
Deletion	Chr1	1964001	1969000	5000	2
Deletion	Chr6	2038459	2038459	1
Deletion	Chr4	3516088	3516088	1
Deletion	Chr8	3935284	3935285	2
Deletion	Chr6	4203594	4203597	4
Deletion	Chr5	4826912	4826912	1
Deletion	Chr7	6906359	6906371	13
Deletion	Chr5	7898988	7898989	2
Deletion	Chr12	10473783	10473784	2
Deletion	Chr3	11644594	11644611	18
Deletion	Chr5	14290469	14290470	2
Deletion	Chr12	15981656	15981741	86
Deletion	Chr8	16756530	16756537	8	LOC_Os08g27450
Deletion	Chr1	19766562	19766564	3	LOC_Os01g35690
Deletion	Chr12	20710669	20710712	44
Deletion	Chr10	21743617	21743625	9
Deletion	Chr1	24132834	24132834	1
Deletion	Chr8	24219722	24219723	2
Deletion	Chr7	24286161	24286164	4	LOC_Os07g40530
Deletion	Chr8	24492368	24492370	3
Deletion	Chr1	25700161	25700161	1	2
Deletion	Chr11	28679770	28679816	47
Deletion	Chr6	29654075	29654076	2
Deletion	Chr1	29685993	29685993	1	LOC_Os01g51650
Deletion	Chr2	30256809	30256810	2
Deletion	Chr3	32917809	32917818	10
Deletion	Chr1	41200338	41200338	1

Insertions: 15

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	15797183	15797184	2
Insertion	Chr2	9174941	9174941	1
Insertion	Chr5	8774912	8774912	1
Insertion	Chr5	16004520	16004520	1
Insertion	Chr6	4511959	4511960	2	LOC_Os06g08950
Insertion	Chr6	20665202	20665202	1
Insertion	Chr8	8294266	8294266	1
Insertion	Chr9	185128	185128	1
Insertion	Chr10	20021487	20021487	1
Insertion	Chr11	16806049	16806050	2
Insertion	Chr11	21138523	21138611	89
Insertion	Chr12	15197681	15197684	4
Insertion	Chr2	7649837	7649838	2
Insertion	Chr3	1455050	1455050	1
Insertion	Chr3	15382740	15382740	1

Inversions: 10

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	1969174	2265081	2
Inversion	Chr1	2208412	2245123
Inversion	Chr1	2208425	2280685
Inversion	Chr1	2265075	2280682	LOC_Os01g04880
Inversion	Chr2	10723552	10723780
Inversion	Chr1	14503818	14504097
Inversion	Chr9	19264783	19264863	LOC_Os09g32270
Inversion	Chr6	19558356	20275990
Inversion	Chr6	19558366	20275995
Inversion	Chr9	21865440	21865740	LOC_Os09g37920

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	7863980	Chr3	22836019
Translocation	Chr12	16649740	Chr10	16558146	2
Translocation	Chr9	18019318	Chr2	5891837	LOC_Os09g29630
Translocation	Chr9	18019667	Chr2	5891845	LOC_Os09g29630

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