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Mutant Information

Mutant Name	FN458-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN458-S Alignment File
Seed Availability	Yes [Order Seeds]
Mapping (Hover to Zoom-In)

Variant Information

Single base substitutions: 18

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	17205209	T-C	HET	INTERGENIC
SBS	Chr1	19038878	T-A	HET	INTERGENIC
SBS	Chr1	20548717	C-T	HET	INTERGENIC
SBS	Chr10	11397986	C-A	HET	INTERGENIC
SBS	Chr11	14509417	T-A	HET	INTERGENIC
SBS	Chr11	19226687	G-A	HET	INTERGENIC
SBS	Chr3	10352673	C-G	HOMO	NON_SYNONYMOUS_CODING	LOC_Os03g18440
SBS	Chr3	1040070	G-A	HET	INTERGENIC
SBS	Chr3	12392025	G-A	HOMO	INTERGENIC
SBS	Chr3	34314155	G-A	HET	INTRON
SBS	Chr4	28524480	G-T	HOMO	INTRON
SBS	Chr5	25014014	G-A	HET	NON_SYNONYMOUS_CODING	LOC_Os05g43060
SBS	Chr5	5329098	C-G	HET	INTERGENIC
SBS	Chr6	11862499	A-G	HET	INTERGENIC
SBS	Chr6	7285367	T-G	HET	INTERGENIC
SBS	Chr7	25551473	G-T	HET	INTERGENIC
SBS	Chr8	10519098	C-T	HOMO	SYNONYMOUS_CODING
SBS	Chr9	2698967	A-G	HET	INTRON

Deletions: 19

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr5	331769	338743	6974
Deletion	Chr10	4746748	4746767	19	LOC_Os10g08754
Deletion	Chr10	5615001	5625000	10000	2
Deletion	Chr11	6361530	6361553	23
Deletion	Chr9	11875183	11875219	36
Deletion	Chr12	13152876	13152881	5
Deletion	Chr6	16033658	16033662	4
Deletion	Chr9	17784213	17784215	2
Deletion	Chr11	19701131	19701135	4
Deletion	Chr8	21010106	21010113	7
Deletion	Chr4	21305791	21305808	17
Deletion	Chr10	22297691	22297711	20	LOC_Os10g41490
Deletion	Chr8	22422369	22422370	1
Deletion	Chr5	22481001	22541000	60000	9
Deletion	Chr1	22977175	22977185	10
Deletion	Chr5	23008204	23008223	19
Deletion	Chr12	24183441	24183459	18
Deletion	Chr1	40701540	40701541	1
Deletion	Chr1	42121281	42121283	2

Insertions: 4

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr11	13903938	13903940	3
Insertion	Chr4	27542513	27542513	1
Insertion	Chr4	28649773	28649773	1
Insertion	Chr5	19305335	19305335	1

Inversions: 1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	969291	969420

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr12	11625108	Chr3	23147740
Translocation	Chr6	23463425	Chr3	29226755	LOC_Os06g39515
Translocation	Chr3	34449942	Chr1	30557534	2
Translocation	Chr3	34450121	Chr1	30557506	2