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Mutant Information

Variant Information

Single base substitutions: 38

Variant Type	Chromosome	Position	Change	Genotype	Gene Affected
SBS	Chr1	6346913	C-T	HET
SBS	Chr1	8641720	G-T	HET
SBS	Chr1	11160995	G-C	HET
SBS	Chr1	25661465	G-A	HOMO
SBS	Chr1	34055245	G-A	HOMO	LOC_Os01g58920
SBS	Chr1	34055246	T-A	HOMO	LOC_Os01g58920
SBS	Chr1	36382723	T-C	HET	LOC_Os01g62810
SBS	Chr2	4402124	C-T	HOMO
SBS	Chr2	28920718	C-T	HET
SBS	Chr3	2896077	T-A	HET
SBS	Chr3	8291568	T-C	HET
SBS	Chr4	8908813	G-C	HET
SBS	Chr4	11306610	G-A	HET
SBS	Chr4	31431238	C-T	HET
SBS	Chr4	31882829	A-G	HET
SBS	Chr5	9805000	A-T	HOMO
SBS	Chr5	14472231	G-T	HET
SBS	Chr5	16616750	T-A	HET
SBS	Chr5	21648064	T-C	HOMO
SBS	Chr6	9936152	C-T	HOMO
SBS	Chr6	11682843	G-C	HET
SBS	Chr6	26792533	G-A	HOMO
SBS	Chr7	8037271	T-C	HOMO
SBS	Chr7	8994596	T-C	HOMO
SBS	Chr7	17900795	A-T	HOMO
SBS	Chr8	9575698	A-G	HOMO
SBS	Chr9	3954200	C-T	HET
SBS	Chr9	3954237	C-A	HET
SBS	Chr9	13392623	T-C	HOMO
SBS	Chr9	16033820	T-A	HET
SBS	Chr10	12896058	A-G	HET
SBS	Chr10	19546145	C-T	HOMO	LOC_Os10g36530
SBS	Chr11	1480409	G-T	HET
SBS	Chr11	8265289	C-T	HET
SBS	Chr12	12913292	T-C	HET
SBS	Chr12	14257567	G-A	HET
SBS	Chr12	24142010	G-A	HET
SBS	Chr12	26336025	C-T	HOMO	LOC_Os12g42370

Deletions: 38

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Deletion	Chr4	1107469	1107469	1
Deletion	Chr10	1366400	1366400	1
Deletion	Chr8	2766268	2766268	1
Deletion	Chr11	3674808	3674808	1
Deletion	Chr9	5223658	5223658	1
Deletion	Chr7	6536486	6536554	69
Deletion	Chr8	7283058	7283058	1
Deletion	Chr12	7851717	7851720	4
Deletion	Chr11	8209317	8209363	47
Deletion	Chr8	8537079	8537079	1
Deletion	Chr8	8781016	8781035	20
Deletion	Chr1	9514665	9514666	2
Deletion	Chr10	10198047	10198047	1	LOC_Os10g20280
Deletion	Chr9	11328800	11328800	1
Deletion	Chr7	11782994	11782994	1
Deletion	Chr7	12201033	12201362	330
Deletion	Chr1	12715900	12715900	1
Deletion	Chr4	14599666	14599666	1
Deletion	Chr6	14692001	15169000	477000	79
Deletion	Chr4	15168509	15168509	1
Deletion	Chr12	15273673	15273673	1
Deletion	Chr1	15578111	15578112	2
Deletion	Chr10	18029156	18029157	2
Deletion	Chr7	20033310	20033310	1
Deletion	Chr1	20611921	20611969	49
Deletion	Chr2	21803328	21803328	1
Deletion	Chr12	21860853	21860853	1
Deletion	Chr7	21968187	21968278	92
Deletion	Chr6	22866738	22866738	1
Deletion	Chr7	22889532	22889532	1
Deletion	Chr12	23188500	23188500	1
Deletion	Chr6	25557294	25557306	13
Deletion	Chr7	28627339	28627339	1
Deletion	Chr5	29951853	29951853	1
Deletion	Chr5	29952188	29952189	2
Deletion	Chr6	30712942	30712942	1
Deletion	Chr3	31638455	31638455	1
Deletion	Chr1	38043866	38043866	1

Insertions: 24

Variant Type	Chromosome	Start	End	Size (bp)	Number of Genes
Insertion	Chr1	32851213	32851214	2
Insertion	Chr2	34727403	34727403	1	LOC_Os02g56640
Insertion	Chr3	18536965	18536965	1
Insertion	Chr4	9785425	9785425	1	LOC_Os04g17840
Insertion	Chr4	23681154	23681154	1
Insertion	Chr5	1140745	1140758	14
Insertion	Chr5	11146617	11146617	1
Insertion	Chr5	20083529	20083531	3
Insertion	Chr5	21534591	21534591	1
Insertion	Chr7	9871334	9871357	24
Insertion	Chr7	17031269	17031269	1
Insertion	Chr7	20670882	20670882	1
Insertion	Chr7	27349463	27349465	3	LOC_Os07g45830
Insertion	Chr8	1332304	1332304	1
Insertion	Chr8	10043247	10043270	24
Insertion	Chr10	6152570	6152570	1
Insertion	Chr11	27044991	27044991	1
Insertion	Chr11	27379964	27379964	1
Insertion	Chr12	22666749	22666858	110
Insertion	Chr12	26437088	26437088	1
Insertion	Chr1	7497978	7497980	3
Insertion	Chr6	7466026	7466029	4
Insertion	Chr8	8017311	8017312	2
Insertion	Chr12	17883816	17883817	2

Inversions: 4

Variant Type	Chromosome	Position 1	Position 2
Inversion	Chr10	3749540	4198236
Inversion	Chr6	14672992	15225668
Inversion	Chr6	15170320	15205986
Inversion	Chr1	16118328	16118439

Translocations: 4

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr4	1384777	Chr2	7913879	LOC_Os04g03250
Translocation	Chr5	8568150	Chr2	17632024	2
Translocation	Chr5	8568594	Chr2	17632019	2
Translocation	Chr8	25707554	Chr7	9985990

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